Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Escherichia coli

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	257908	270540	12633	21	51.9 %	8	PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000)
2	2068952	2077943	8992	9	54.18 %	5	PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000)
3	2987536	2999057	11522	17	36.67 %	2	LIM (Escherichia coli O157:H7 Sakai)
4	4509804	4518235	8432	8	56.99 %	7	SRL (Shigella flexneri YSH6000)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	2280632	2297644	17013	19	52.25 %	1	Not named (Cronobacter sakazakii ATCC BAA-894) PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67)
2	3070165	3081635	11471	10	50.97 %	1	tcd island (Photorhabdus luminescens W14)
3	3110366	3130143	19778	17	52.3 %	3	PAI V 536 (Escherichia coli 536)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	2043468	2065764	22297	18	47.65 %	1	PAI IV 536 (Escherichia coli 536) PAI IV APEC-O1 (Escherichia coli APEC O1)

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

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