Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Escherichia coli

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

No	Name	Start	End	Size(bp)	Insertion Site	Function
1	TAI	1058795	1146271	87477	tRNA-serW	OI-43 and OI-48 are duplicates, encoding tellurite resistance (Ter) and the putative adhesin Iha and are therefore called Ter- and adherence-conferring islands (TAIs)
2	TAI	1454402	1541877	87476	tRNA-serX	OI-43 and OI-48 are duplicates, encoding tellurite resistance (Ter) and the putative adhesin Iha and are therefore called Ter- and adherence-conferring islands (TAIs)
3	OI-57	1849324	1858530	9207	-	Non-LEE-encoded effector genes nleG2-3, nleG6-2, and nleG5-2
4	OI-122	3919272	3942216	22945	tRNA-pheV	Two non-LEE effector (Nle) molecules that are secreted by the LEE type III secretion system
5	LEE	4649752	4692545	42794	tRNA-selC	Type III secretion system, translocation of Tir, adherence of EHEC to epithelial cells, Eae, part of O-island148 (OI#148)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	232258	267003	34746	36	51.38 %	6	AGI-1 (Escherichia coli BEN2908) PAI II APEC-O1 (Escherichia coli APEC O1) tcd island (Photorhabdus luminescens W14)
2	1058795	1146271	87477	105	47.99 %	31	PiCp 7 (Corynebacterium pseudotuberculosis FRC41) PiCp 7 (Corynebacterium pseudotuberculosis 1002) PiCp 7 (Corynebacterium pseudotuberculosis C231) PiCp 7 (Corynebacterium pseudotuberculosis I19) PAI I 536 (Escherichia coli 536) PAI I CL3 (Escherichia coli CL3) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) LEE (Escherichia coli 11128) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli 86-24) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) PAI IV APEC-O1 (Escherichia coli APEC O1) Tn6060 (Pseudomonas aeruginosa 37308) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000)
3	1454402	1541877	87476	102	47.93 %	29	PiCp 7 (Corynebacterium pseudotuberculosis FRC41) PiCp 7 (Corynebacterium pseudotuberculosis 1002) PiCp 7 (Corynebacterium pseudotuberculosis C231) PiCp 7 (Corynebacterium pseudotuberculosis I19) PAI I 536 (Escherichia coli 536) PAI I CL3 (Escherichia coli CL3) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) LEE (Escherichia coli 11128) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli 86-24) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) PAI IV APEC-O1 (Escherichia coli APEC O1) Tn6060 (Pseudomonas aeruginosa 37308) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000)
4	2788401	2822145	33745	32	48.09 %	3	PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) OI-122 (Escherichia coli O157:H7 EDL933) PAI IV 536 (Escherichia coli 536) PAI I CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) PAI IV APEC-O1 (Escherichia coli APEC O1) SRL (Shigella flexneri YSH6000)
5	3777176	3804692	27517	37	35.92 %	14	ETT2 (Escherichia coli 789) LIM (Escherichia coli O157:H7 Sakai) SPI-1 (Salmonella typhimurium LT2) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-1 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) SSR-1 (Sodalis glossinidius ) SSR-2 (Sodalis glossinidius )
6	3919272	3942216	22945	25	46.28 %	6	BcenGI11 (Burkholderia cenocepacia J2315) PAI I 536 (Escherichia coli 536) LEE (Escherichia coli ATCC43895) LEE (Escherichia coli 71074) LEE (Escherichia coli 83/39) LEE (Escherichia coli RW1374) LEE (Escherichia coli O157:H7 EDL933) LEE (Escherichia coli O157:H7 Sakai) LEE (Escherichia coli 12009) LEE (Escherichia coli 11128) LEE II (Escherichia coli 413/89-1) AGI-3 (Escherichia coli BEN2908) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) OI-122 (Escherichia coli O157:H7 EDL933) PAI I CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) SRL (Shigella flexneri YSH6000)
7	4649752	4694488	44737	54	41.15 %	46	LEE (Citrobacter rodentium DBS100) PAI I 536 (Escherichia coli 536) LEE (Escherichia coli E2348/69) LEE (Escherichia coli ATCC43895) LEE (Escherichia coli 71074) LEE (Escherichia coli 83/39) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli RDEC-1) LEE (Escherichia coli O157:H7 EDL933) LEE (Escherichia coli O157:H7 Sakai) LEE (Escherichia coli 12009) LEE (Escherichia coli 11368) LEE (Escherichia coli 11128) LEE II (Escherichia coli 413/89-1) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) PAI V 536 (Escherichia coli 536) PAI-I AL862 (Escherichia coli AL862) SESS LEE (Salmonella enterica S1296) SESS LEE (Salmonella enterica S1635) SHI-1 (Shigella flexneri 2a str. 301) SRL (Shigella flexneri YSH6000) Not named (Yersinia pestis CO92)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

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No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	1771806	1782938	11133	11	52 %	2	PAI I CFT073 (Escherichia coli CFT073)
2	3086831	3102460	15630	16	52.2 %	1	Not named (Cronobacter sakazakii ATCC BAA-894) PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

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• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

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