Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Yersinia pestis

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

No	Name	Start	End	Size(bp)	Insertion Site	Function
1	Not named	255039	273457	18419	-	Type III secretion systems
2	Not named	344213	348831	4619	tRNA-Phe	Insect viral enhancing factor
3	HPI-2	835033	856936	21904	-	Siderophore biosynthesis
4	HPI	2134947	2171362	36416	tRNA-asn	Yersiniabactin synthesis, regulation, transport, and uptake (irp1 to 9, ybtA, fyuA), pigmentation locus (pgm locus)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	2134882	2172405	37524	25	56.02 %	11	PAI IV APEC-O1 (Escherichia coli APEC O1) HPI (Yersinia enterocolitica WA 314) HPI (Yersinia pseudotuberculosis ) HPI (Yersinia pestis KIM6+) HPI (Yersinia pestis 6/69) HPI (Yersinia pestis CO92) HPI (Yersinia pestis KIM) HPI (Yersinia pestis biovar Medievalis str. 91001) HPI (Yersinia pseudotuberculosis IP32953) HPI (Yersinia enterocolitica 8081)
2	4001721	4019784	18064	12	53.61 %	3	AGI-1 (Escherichia coli BEN2908) PAI II APEC-O1 (Escherichia coli APEC O1)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	255039	273457	18419	21	49.13 %	17	LEE (Citrobacter rodentium DBS100) LEE (Escherichia coli E2348/69) LEE (Escherichia coli ATCC43895) LEE (Escherichia coli 71074) LEE (Escherichia coli 83/39) LEE (Escherichia coli RW1374) LEE (Escherichia coli RDEC-1) LEE (Escherichia coli O157:H7 EDL933) LEE (Escherichia coli O157:H7 Sakai) LEE (Escherichia coli 12009) LEE (Escherichia coli 11368) LEE (Escherichia coli 11128) LEE II (Escherichia coli 413/89-1) TTSS locus (Photorhabdus luminescens W14) SPI-2 (Salmonella enterica LT2) SPI-2 (Salmonella typhimurium LT2) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-2 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) SESS LEE (Salmonella enterica S1296) SESS LEE (Salmonella enterica S1635) Not named (Yersinia pestis CO92)
2	835033	856936	21904	9	49.22 %	2	HPI-2 (Yersinia pestis CO92)
3	1096175	1105565	9391	6	52.72 %	5	Not named (Escherichia coli UMN026) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-3 (Shigella boydii 0-1392)
4	3282136	3295508	13373	10	45.84 %	3	SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18)
5	4098633	4119215	20583	11	45.17 %	3	tcd island (Photorhabdus luminescens W14) tc-PAIYe (Yersinia enterocolitica W22703)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	289431	300362	10932	12	48.83 %	7	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) Tn6060 (Pseudomonas aeruginosa 37308)
2	2006019	2016211	10193	11	48.98 %	1	tcd island (Photorhabdus luminescens W14)