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No | Name | Start | End | Size(bp) | Insertion Site | Function |
1 | SHI-1 | 3044640 | 3089947 | 45308 | tRNA-pheV | Enterotoxin, proteases (SigA, Pic (She), Shet1A and Shet1B, Sap) |
2 | SHI-2 | 3940059 | 3968853 | 28795 | tRNA-selC | Iron uptake systems, immunity to colicin V (IucA, IucB, IucC, IucD, IutA, aerobactin) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 219312 | 241633 | 22322 | 31 | 51.67 % | 1 | LEE (Escherichia coli 11128) AGI-3 (Escherichia coli BEN2908) tcd island (Photorhabdus luminescens W14) SGI1 (Proteus mirabilis PmSCO) SGI1 (Proteus mirabilis PmABB) SGI1 (Proteus mirabilis PmVER) SGI1 (Proteus mirabilis PmGUE) PAPI-2 (Pseudomonas aeruginosa PA14) SGI1 (Salmonella enterica SRC73) SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18) VPI-2 (Vibrio cholerae Amazonia 3509) VPI-2 (Vibrio cholerae O1 biovar eltor str. N16961) VPI-2 (Vibrio cholerae O395) |
2 | 313753 | 325874 | 12122 | 14 | 42.41 % | 3 | SHI-O (Shigella flexneri Y53) |
3 | 1892281 | 1905523 | 13243 | 17 | 48.9 % | 4 | PAI II CFT073 (Escherichia coli CFT073) SPI-1 (Salmonella typhimurium LT2) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-1 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) centisome 63 pathogenicity island (Salmonella enterica SL1344) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 2457T) |
4 | 2041762 | 2066685 | 24924 | 31 | 48.96 % | 1 | LEE (Escherichia coli 12009) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) OI-122 (Escherichia coli O157:H7 EDL933) PAI IV 536 (Escherichia coli 536) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) PAI IV APEC-O1 (Escherichia coli APEC O1) SHI-2 (Shigella flexneri M90T) SHI-O (Shigella flexneri Y53) |
5 | 3044640 | 3115039 | 70400 | 55 | 49.51 % | 22 | PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000) |
6 | 3940059 | 3968853 | 28795 | 25 | 48.46 % | 11 | PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 11128) AGI-3 (Escherichia coli BEN2908) PAI I CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) Not named (Escherichia coli UMN026) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-3 (Shigella boydii 0-1392) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 1225471 | 1237071 | 11601 | 10 | 51.4 % | 2 | PAI I CFT073 (Escherichia coli CFT073) |
2 | 2179534 | 2203575 | 24042 | 22 | 51.04 % | 1 | AbaR1 (Acinetobacter baumannii AYE) AGI-3 (Escherichia coli BEN2908) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) |
3 | 2283289 | 2299102 | 15814 | 18 | 52.22 % | 1 | Not named (Cronobacter sakazakii ATCC BAA-894) PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of REI-resistance genes | REIs homologous to this region |
1 | 4538025 | 4549979 | 11955 | 12 | 52.26 % | 1 | tcd island (Photorhabdus luminescens W14) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of REI-resistance genes | REIs homologous to this region |
1 | 4071285 | 4082054 | 10770 | 10 | 48.38 % | 3 | AbaR1 (Acinetobacter baumannii AYE) AGI-3 (Escherichia coli BEN2908) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) |