Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Yersinia pestis

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	4070342	4089151	18810	14	53.43 %	3	AGI-1 (Escherichia coli BEN2908) PAI II APEC-O1 (Escherichia coli APEC O1)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	3592149	3601539	9391	7	52.73 %	5	Not named (Escherichia coli UMN026) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-3 (Shigella boydii 0-1392)
2	3632872	3654789	21918	9	49.22 %	2	HPI-2 (Yersinia pestis CO92)
3	3871457	3889876	18420	21	49.13 %	15	SPI-2 (Salmonella enterica LT2) SPI-2 (Salmonella typhimurium LT2) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-2 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) Not named (Yersinia pestis CO92)
4	3970886	3991478	20593	11	45.17 %	3	tcd island (Photorhabdus luminescens W14) tc-PAIYe (Yersinia enterocolitica W22703)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	2635784	2645982	10199	11	48.98 %	1	tcd island (Photorhabdus luminescens W14)
2	3844552	3855483	10932	12	48.83 %	7	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) Tn6060 (Pseudomonas aeruginosa 37308)