Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Escherichia coli

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

No	Name	Start	End	Size(bp)	Insertion Site	Function
1	Not named	3445924	3503263	57340	tRNA-Phe	shiA homolog, aerobactin siderophore

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	231779	264517	32739	29	52.93 %	5	AGI-1 (Escherichia coli BEN2908) PAI II APEC-O1 (Escherichia coli APEC O1) tcd island (Photorhabdus luminescens W14)
2	638333	646363	8031	9	45.42 %	7	PAI III 536 (Escherichia coli 536)
3	2276274	2329098	52825	38	54.38 %	12	HPI (Escherichia coli ECOR31) PAI IV 536 (Escherichia coli 536) PAI IV APEC-O1 (Escherichia coli APEC O1) HPI (Yersinia enterocolitica WA 314) HPI (Yersinia pseudotuberculosis ) HPI (Yersinia pestis 6/69) HPI (Yersinia pestis CO92) HPI (Yersinia pestis KIM) HPI (Yersinia pestis biovar Medievalis str. 91001) HPI (Yersinia pseudotuberculosis IP32953) HPI (Yersinia enterocolitica 8081)
4	3294163	3321618	27456	33	35.85 %	16	ETT2 (Escherichia coli 789) LIM (Escherichia coli O157:H7 Sakai) SPI-1 (Salmonella typhimurium LT2) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-1 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) SSR-1 (Sodalis glossinidius ) SSR-2 (Sodalis glossinidius )
5	3445924	3587994	142071	140	48.03 %	64	PAI I 536 (Escherichia coli 536) PAI I APEC-O1 (Escherichia coli APEC O1) PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI I CFT073 (Escherichia coli CFT073) PAI I CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) Not named (Escherichia coli UMN026) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-3 (Shigella boydii 0-1392) SRL (Shigella flexneri YSH6000)
6	4984262	5006229	21968	28	55.88 %	2	AbaR1 (Acinetobacter baumannii AYE) AbaR20 (Acinetobacter baumannii ACICU) AbaR26 (Acinetobacter baumannii D30) AbGRI2-1 (Acinetobacter baumannii WM99c) AbaR5 (Acinetobacter baumannii 3208) AbaR4e (Acinetobacter baumannii TCDC-AB0715) Not named (Corynebacterium diphtheriae BH8) AGI-3 (Escherichia coli BEN2908) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) Tn5036-like (Klebsiella pneumoniae 12836) ICEPmu1 (Pasteurella multocida 36950) SGI1 (Proteus mirabilis PmBRI) SGI1 (Proteus mirabilis PmCAU) SGI1 (Proteus mirabilis PmSCO) SGI1 (Proteus mirabilis PmMAT) SGI1 (Proteus mirabilis PmABB) SGI1 (Proteus mirabilis PmVER) SGI1 (Proteus mirabilis PmGUE) Tn6060 (Pseudomonas aeruginosa 37308) PAGI-2 (Pseudomonas aeruginosa U6) PAGI-2(C) (Pseudomonas aeruginosa U09) SGI1 (Salmonella enterica DT104) SGI1 (Salmonella enterica SRC73) SGI2 (Salmonella enterica SRC19) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000)
7	5022195	5052365	30171	34	53.13 %	20	PAI I APEC-O1 (Escherichia coli APEC O1) LEE (Escherichia coli 84/110-1) LEE (Escherichia coli RW1374) LEE (Escherichia coli 12009) AGI-3 (Escherichia coli BEN2908) PAI II 536 (Escherichia coli 536) TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) PAI III 536 (Escherichia coli 536) PAI V 536 (Escherichia coli 536) PAI II CFT073 (Escherichia coli CFT073) PAI-I AL862 (Escherichia coli AL862) PAI IV APEC-O1 (Escherichia coli APEC O1) SHI-1 (Shigella flexneri YSH6000T) SHI-1 (Shigella flexneri 2a str. 301) SHI-1 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	1485154	1496833	11680	11	51.59 %	2	PAI I CFT073 (Escherichia coli CFT073)
2	2583046	2598683	15638	16	52.37 %	1	Not named (Cronobacter sakazakii ATCC BAA-894) PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	2351719	2365207	13489	15	47.04 %	1	PAI IV APEC-O1 (Escherichia coli APEC O1)

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	5136237	5148852	12616	12	54.46 %	1	tcd island (Photorhabdus luminescens W14)