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No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 294815 | 336616 | 41802 | 39 | 54.35 % | 6 | tcd island (Photorhabdus luminescens W14) SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18) |
2 | 340360 | 351321 | 10962 | 14 | 47.16 % | 3 | SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18) |
3 | 1172012 | 1192285 | 20274 | 21 | 50.94 % | 8 | tcd island (Photorhabdus luminescens W14) SPI-5 (Salmonella enterica 2229) SPI-5 (Salmonella typhimurium LT2) SPI-5 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-5 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
4 | 1322594 | 1330900 | 8307 | 9 | 40.94 % | 2 | SPI-11 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
5 | 1456438 | 1498322 | 41885 | 47 | 47.53 % | 45 | LEE (Citrobacter rodentium DBS100) LEE (Escherichia coli E2348/69) LEE (Escherichia coli ATCC43895) LEE (Escherichia coli 71074) LEE (Escherichia coli 83/39) LEE (Escherichia coli RW1374) LEE (Escherichia coli RDEC-1) LEE (Escherichia coli O157:H7 EDL933) LEE (Escherichia coli O157:H7 Sakai) LEE (Escherichia coli 12009) LEE (Escherichia coli 11368) LEE (Escherichia coli 11128) LEE II (Escherichia coli 413/89-1) SPI-2 (Salmonella enterica LT2) SPI-2 (Salmonella enterica SL1344) SPI-2 (Salmonella typhimurium LT2) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-2 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) SESS LEE (Salmonella enterica S1296) SESS LEE (Salmonella enterica S1635) Not named (Yersinia pestis CO92) |
6 | 2367586 | 2377328 | 9743 | 11 | 60.45 % | 1 | PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
7 | 2903666 | 2918754 | 15089 | 10 | 52.83 % | 5 | PAI III 536 (Escherichia coli 536) |
8 | 2998830 | 3043108 | 44279 | 50 | 45.35 % | 38 | LIM (Escherichia coli O157:H7 Sakai) TTSS locus (Photorhabdus luminescens W14) SPI-1 (Salmonella typhimurium LT2) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-1 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) centisome 63 pathogenicity island (Salmonella enterica SL1344) SSR-1 (Sodalis glossinidius ) SSR-2 (Sodalis glossinidius ) |
9 | 3971453 | 3989470 | 18018 | 15 | 47.74 % | 8 | SPI-3 (Salmonella enterica 14028s) SPI-3 (Salmonella typhimurium LT2) SPI-3 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-3 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
10 | 4498862 | 4526992 | 28131 | 11 | 44.82 % | 9 | SPI-4 (Salmonella enterica LT2) SPI-4 (Salmonella enterica ST4/74) SPI-4 (Salmonella typhimurium LT2) SPI-4 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-4 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 2651969 | 2675180 | 23212 | 5 | 57.01 % | 5 | CS54 island (Salmonella enterica ATCC14028) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of REI-resistance genes | REIs homologous to this region |
1 | 2114962 | 2123340 | 8379 | 11 | 52.26 % | 1 | PAI IV APEC-O1 (Escherichia coli APEC O1) |