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No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 294829 | 336646 | 41818 | 38 | 54.37 % | 6 | tcd island (Photorhabdus luminescens W14) SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18) |
2 | 342222 | 351351 | 9130 | 10 | 47.66 % | 3 | SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18) |
3 | 1323770 | 1332076 | 8307 | 9 | 40.94 % | 2 | SPI-11 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
4 | 1457613 | 1499497 | 41885 | 47 | 47.53 % | 45 | LEE (Citrobacter rodentium DBS100) LEE (Escherichia coli E2348/69) LEE (Escherichia coli ATCC43895) LEE (Escherichia coli 71074) LEE (Escherichia coli 83/39) LEE (Escherichia coli RW1374) LEE (Escherichia coli RDEC-1) LEE (Escherichia coli O157:H7 EDL933) LEE (Escherichia coli O157:H7 Sakai) LEE (Escherichia coli 12009) LEE (Escherichia coli 11368) LEE (Escherichia coli 11128) LEE II (Escherichia coli 413/89-1) SPI-2 (Salmonella enterica LT2) SPI-2 (Salmonella enterica SL1344) SPI-2 (Salmonella typhimurium LT2) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-2 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) SESS LEE (Salmonella enterica S1296) SESS LEE (Salmonella enterica S1635) Not named (Yersinia pestis CO92) |
5 | 2339463 | 2349205 | 9743 | 12 | 60.47 % | 1 | PAGI-2(C) (Pseudomonas aeruginosa C) SPI-12 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
6 | 2934247 | 2949329 | 15083 | 12 | 52.8 % | 5 | PAI III 536 (Escherichia coli 536) |
7 | 3029272 | 3073214 | 43943 | 49 | 45.38 % | 38 | LIM (Escherichia coli O157:H7 Sakai) TTSS locus (Photorhabdus luminescens W14) SPI-1 (Salmonella typhimurium LT2) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-1 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) centisome 63 pathogenicity island (Salmonella enterica SL1344) SSR-1 (Sodalis glossinidius ) SSR-2 (Sodalis glossinidius ) |
8 | 3971472 | 3989490 | 18019 | 16 | 47.72 % | 10 | SPI-3 (Salmonella enterica 14028s) SPI-3 (Salmonella typhimurium LT2) SPI-3 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-3 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
9 | 4007904 | 4030355 | 22452 | 24 | 51.23 % | 10 | AbaR1 (Acinetobacter baumannii AYE) AGI-3 (Escherichia coli BEN2908) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) Not named (Escherichia coli UMN026) SPI-1 (Salmonella typhimurium LT2) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-1 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-1 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) centisome 63 pathogenicity island (Salmonella enterica SL1344) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri M90T) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SHI-3 (Shigella boydii 0-1392) |
10 | 4061516 | 4100732 | 39217 | 46 | 54.88 % | 6 | AbaR1 (Acinetobacter baumannii AYE) AbaR20 (Acinetobacter baumannii ACICU) AbaR26 (Acinetobacter baumannii D30) AbGRI2-1 (Acinetobacter baumannii WM99c) AbaR5 (Acinetobacter baumannii 3208) AbaR4e (Acinetobacter baumannii TCDC-AB0715) AGI-3 (Escherichia coli BEN2908) Not named (Escherichia coli EC20020119) PAI V 536 (Escherichia coli 536) PAI-I AL862 (Escherichia coli AL862) Tn2411 (Escherichia coli 42) Tn5036-like (Klebsiella pneumoniae 12836) SGI1 (Proteus mirabilis PmBRI) SGI1 (Proteus mirabilis PmCAU) SGI1 (Proteus mirabilis PmSCO) SGI1 (Proteus mirabilis PmMAT) SGI1 (Proteus mirabilis PmABB) SGI1 (Proteus mirabilis PmVER) SGI1 (Proteus mirabilis PmGUE) Tn6060 (Pseudomonas aeruginosa 37308) PAGI-2 (Pseudomonas aeruginosa U6) PAGI-2(C) (Pseudomonas aeruginosa U09) PAGI-5 (Pseudomonas aeruginosa PSE9) SGI1 (Salmonella enterica DT104) SGI1 (Salmonella enterica SRC73) SGI2 (Salmonella enterica SRC19) SPI-7 (Salmonella enterica subsp. enterica serovar Typhi CT18) SHI-2 (Shigella flexneri 2a str. 301) SHI-2 (Shigella flexneri 2a str. 2457T) SRL (Shigella flexneri YSH6000) |
11 | 4581375 | 4609382 | 28008 | 10 | 44.82 % | 9 | SPI-4 (Salmonella enterica LT2) SPI-4 (Salmonella enterica ST4/74) SPI-4 (Salmonella typhimurium LT2) SPI-4 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-4 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of PAI-virulence genes | PAIs homologous to this region |
1 | 1173007 | 1194003 | 20997 | 20 | 50.54 % | 7 | tcd island (Photorhabdus luminescens W14) SPI-5 (Salmonella enterica 2229) SPI-5 (Salmonella typhimurium LT2) SPI-5 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-5 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) |
2 | 2623014 | 2646226 | 23213 | 6 | 57.02 % | 5 | CS54 island (Salmonella enterica ATCC14028) |
No | Start | End | Size(bp) | No. of ORFs | G+C content |
No. of homologs of REI-resistance genes | REIs homologous to this region |
1 | 2086848 | 2095226 | 8379 | 9 | 52.29 % | 1 | PAI IV APEC-O1 (Escherichia coli APEC O1) |