Genome Information

PAthogenisity Island DataBase (PAI DB)

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Genome Information

• General information

Accession:

Strain :

Yersinia pestis

Type :

Size :

G+C content :

[Note]

• PAIs (PAI reported to be located in this genome)

• cPAIs (PAI-like region overlapping genomic islands (candidate PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	2135113	2172278	37166	19	56.13 %	11	PAI IV APEC-O1 (Escherichia coli APEC O1) HPI (Yersinia enterocolitica WA 314) HPI (Yersinia pestis KIM6+) HPI (Yersinia pestis 6/69) HPI (Yersinia pestis CO92) HPI (Yersinia pestis KIM) HPI (Yersinia pestis biovar Medievalis str. 91001) HPI (Yersinia pseudotuberculosis IP32953) HPI (Yersinia enterocolitica 8081)
2	3893115	3911825	18711	14	53.43 %	3	AGI-1 (Escherichia coli BEN2908) PAI II APEC-O1 (Escherichia coli APEC O1)

• nPAIs (PAI-like region not overlapping genomic islands (non-probable PAI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of PAI-virulence genes	PAIs homologous to this region
1	252088	269449	17362	15	49.14 %	11	LEE (Citrobacter rodentium DBS100) LEE (Escherichia coli E2348/69) LEE (Escherichia coli ATCC43895) LEE (Escherichia coli 71074) LEE (Escherichia coli 83/39) LEE (Escherichia coli RW1374) LEE (Escherichia coli RDEC-1) LEE (Escherichia coli O157:H7 EDL933) LEE (Escherichia coli O157:H7 Sakai) LEE (Escherichia coli 12009) LEE (Escherichia coli 11368) LEE (Escherichia coli 11128) LEE II (Escherichia coli 413/89-1) TTSS locus (Photorhabdus luminescens W14) SPI-2 (Salmonella enterica LT2) SPI-2 (Salmonella typhimurium LT2) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi CT18) SPI-2 (Salmonella enterica subsp. enterica serovar Typhi Ty2) SPI-2 (Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67) Not named (Yersinia pestis CO92)
2	833228	854958	21731	9	49.25 %	2	HPI-2 (Yersinia pestis CO92)
3	3279541	3292913	13373	10	45.84 %	3	SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18)
4	3990689	4010765	20077	11	45.27 %	3	tcd island (Photorhabdus luminescens W14) tc-PAIYe (Yersinia enterocolitica W22703)

• REIs (REI reported to be located in this genome)

• cREIs (REI-like region overlapping genomic islands (candidate REI))

*

• nREIs (REI-like region not overlapping genomic islands (non-probable REI))

*

No	Start	End	Size(bp)	No. of ORFs	G+C content	No. of homologs of REI-resistance genes	REIs homologous to this region
1	286479	297411	10933	13	48.82 %	7	TAI (Escherichia coli O157:H7 EDL933) TAI (Escherichia coli O157:H7 EDL933) Tn6060 (Pseudomonas aeruginosa 37308)
2	2005387	2015579	10193	11	48.98 %	1	tcd island (Photorhabdus luminescens W14)