PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Salmonella enterica CT18 (NC_003198)
Location : 292653 - 360757 bp
Size : 68105 bp
GC content : 51.4 %
GC bias (=GCregion - GCgenome) : -0.65 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 292653-292729 77 + tRNA-Asp-
2yafB NP_454858.1 292894-293697 804 + hypothetical oxidoreductase-
3yafC NP_454859.1 293718-294632 915 - hypothetical transcriptional regulator-
4STY0278 NP_454860.1 294737-295912 1176 + putative drug efflux protein-
5STY0279 NP_454861.1 296065-296844 780 + conserved hypothetical protein-
6yafE NP_454862.1 296922-297692 771 + putative methyltransferase-
7mltD NP_454863.1 297748-299115 1368 - membrane-bound lytic murein transglycosylase d precursor-
8gloB NP_454864.1 299187-299942 756 - probable hydroxyacylglutathione hydrolase-
9STY0283 NP_454865.1 299977-300699 723 + conserved hypothetical protein-
10STY0284 NP_454866.1 300696-301163 468 - ribonuclease H-
11STY0285 NP_454867.1 301227-301958 732 + DNA polymerase III epsilon subunit-
12tRNA-Asp - 302092-302168 77 + tRNA-Asp-
13STY0286 NP_454868.1 302488-303120 633 - hypothetical protein-
14STY0287 NP_454869.1 303120-303542 423 - hypothetical protein-
15STY0288 NP_454870.1 303553-304548 996 - hypothetical protein-
16STY0289 NP_454871.1 304545-306428 1884 - hypothetical proteinVirulence
17STY0290 NP_454872.1 306444-306938 495 - conserved hypothetical protein-
18STY0291 NP_454873.1 306935-307759 825 - hypothetical protein-
19STY0292 NP_454874.1 307746-308648 903 - hypothetical protein-
20STY0293 NP_454875.1 308657-308728 72 - hypothetical protein-
21STY0294 NP_454876.1 309016-311679 2664 + ClpB-like proteinVirulence
22STY0295 NP_454877.1 311664-311762 99 + hypothetical protein-
23STY0296 NP_454878.1 311765-312055 291 + hypothetical protein-
24STY0297 NP_454879.1 312119-312661 543 + conserved hypothetical proteinVirulence
25STY0298 - 312685-314193 1509 + conserved hypothetical protein (pseudogene)-
26STY0300 NP_454880.1 314246-314647 402 + hypothetical protein-
27STY0301 NP_454881.1 314619-315044 426 + hypothetical protein-
28STY0302 NP_454882.1 315281-315766 486 + conserved hypothetical proteinVirulence
29STY0303 NP_454883.1 315833-316369 537 + probable lipoprotein-
30STY0304 NP_454884.1 316373-317716 1344 + conserved hypothetical protein-
31STY0305 NP_454885.1 317713-319014 1302 + putative membrane protein-
32STY0306 NP_454886.1 319019-319768 750 + putative membrane protein-
33STY0307 NP_454887.1 319800-320294 495 + hypothetical protein-
34STY0308 - 320531-324392 3862 + probable IcmF-related integral membrane ATP-binding protein (pseudogene)-
35STY0310 NP_454888.1 324392-325159 768 + hypothetical protein-
36STY0311 NP_454889.1 325202-325672 471 + hypothetical protein-
37STY0312 NP_454890.1 325657-326130 474 + probable secreted protein-
38STY0313 NP_454891.1 326234-326704 471 + hypothetical protein-
39STY0314 NP_454892.1 326689-327150 462 + probable secreted protein-
40STY0316 NP_454893.1 327278-327694 417 + probable secreted protein-
41STY0317 NP_454894.1 327721-328158 438 + hypothetical protein-
42STY0318 NP_454895.1 328166-328273 108 + hypothetical protein-
43STY0319 NP_454896.1 328636-330825 2190 + Rhs-family protein-
44STY0320 NP_454897.1 330849-331295 447 + hypothetical protein-
45STY0321 NP_454898.1 331314-335378 4065 + Rhs-family protein-
46STY0322 NP_454899.1 335381-336058 678 + hypothetical protein-
47STY0323 NP_454900.1 336077-336370 294 + hypothetical protein-
48STY0324 NP_454901.1 336466-338997 2532 + Rhs-family protein-
49STY0326 NP_454902.1 339076-339336 261 + conserved hypothetical protein-
50STY0327 NP_454903.1 339338-339781 444 + hypothetical protein-
51STY0328 NP_454904.1 339851-340156 306 - hypothetical protein-
52STY0329 - 340209-340913 705 + IS element transposase (pseudogene)-
53safA NP_454905.1 341669-342163 495 + probable lipoprotein-
54safE - 342296-342794 499 + probable lipoprotein (pseudogene)-
55safB NP_454906.1 342869-343609 741 + periplasmic fimbrial chaperone proteinVirulence
56safC NP_454907.1 343633-346143 2511 + outer-membrane fimbrial usher proteinVirulence
57safD NP_454908.1 346165-346635 471 + putative fimbrial structural subunit-
58STY0338 NP_454909.1 347043-347864 822 + conserved hypothetical proteinVirulence
59STY0339 - 348345-348476 132 + probable transposase remnant (pseudogene)-
60sinR NP_454910.1 348682-349626 945 + LysR-family transcriptional regulator SinR-
61STY0342 NP_454911.1 349746-349859 114 + hypothetical protein-
62STY0343 - 349946-350113 168 + probable transposase remnant (pseudogene)-
63STY0344 - 350172-350549 378 - probable transposase remnant (pseudogene)-
64tcfA NP_454912.1 351764-352474 711 + putative fimbrial protein-
65tcfB NP_454913.1 352525-353100 576 + putative fimbrial subunitVirulence
66tsaC NP_454914.1 353209-355896 2688 + outer membrane fimbrial usher protein-
67tcfD NP_454915.1 355919-356998 1080 + putative fimbrail protein-
68tinR NP_454916.1 357131-357586 456 + transcriptional regulator-
69STY0350 NP_454917.1 357726-358343 618 + hypothetical protein-
70STY0351 NP_454918.1 359306-360025 720 - possible outer membrane adhesin-
71STY0352 NP_454919.1 360350-360757 408 - probable secreted protein-


tRNA-Asp tRNA-Asp