|
Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Escherichia coli CFT073 (NC_004431) Location : 3406225 - 3552913 bp Size : 146689 bp GC content : 47.8 % GC bias (=GCregion - GCgenome) : -2.65 % |
| No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
| 1 | tRNA-Phe | - | 3406225-3406300 | 76 | + | tRNA-Phe | - |
| 2 | NA | NP_755431.1 | 3406498-3407763 | 1266 | + | prophage P4 integrase | - |
| 3 | NA | NP_755432.1 | 3408019-3409062 | 1044 | + | ShiA-like protein | Virulence |
| 4 | NA | NP_755433.1 | 3409205-3409423 | 219 | + | hypothetical protein | Virulence |
| 5 | NA | NP_755434.1 | 3409389-3410474 | 1086 | - | hypothetical protein | Virulence |
| 6 | NA | NP_755435.1 | 3410473-3410877 | 405 | + | hypothetical protein | - |
| 7 | NA | NP_755436.1 | 3410874-3411221 | 348 | + | hypothetical protein | - |
| 8 | NA | NP_755437.1 | 3411270-3411677 | 408 | + | hypothetical protein | Virulence |
| 9 | NA | NP_755438.1 | 3411690-3412808 | 1119 | + | hypothetical protein | - |
| 10 | NA | NP_755439.1 | 3413218-3414690 | 1473 | - | hypothetical protein | Virulence |
| 11 | NA | NP_755440.1 | 3414691-3415413 | 723 | - | response regulator | Virulence |
| 12 | NA | NP_755441.1 | 3415551-3415946 | 396 | + | hypothetical protein | Virulence |
| 13 | NA | NP_755442.1 | 3416056-3416892 | 837 | + | hypothetical protein | Virulence |
| 14 | NA | NP_755443.1 | 3416947-3417189 | 243 | + | hypothetical protein | Virulence |
| 15 | hlyC | NP_755444.1 | 3418210-3418884 | 675 | + | hemolysin C | Virulence |
| 16 | hlyA | NP_755445.1 | 3418896-3421970 | 3075 | + | hemolysin A | Virulence |
| 17 | NA | NP_755446.1 | 3421458-3421610 | 153 | - | hypothetical protein | - |
| 18 | NA | NP_755447.1 | 3421802-3422014 | 213 | - | hypothetical protein | - |
| 19 | hlyB | NP_755448.1 | 3422041-3424164 | 2124 | + | hemolysin B | Virulence |
| 20 | hlyD | NP_755449.1 | 3424183-3425619 | 1437 | + | hemolysin D | Virulence |
| 21 | NA | NP_755450.1 | 3425931-3426749 | 819 | - | transposase insF | - |
| 22 | NA | NP_755451.1 | 3426785-3427087 | 303 | - | hypothetical protein | - |
| 23 | NA | NP_755452.1 | 3427169-3427570 | 402 | + | hypothetical protein | - |
| 24 | NA | NP_755453.1 | 3427567-3427914 | 348 | + | hypothetical protein | - |
| 25 | NA | NP_755454.1 | 3427962-3428432 | 471 | - | hypothetical protein | Virulence |
| 26 | NA | NP_755455.1 | 3427964-3428356 | 393 | + | hypothetical protein | Virulence |
| 27 | NA | NP_755456.1 | 3428529-3428678 | 150 | - | hypothetical protein | Virulence |
| 28 | papX | NP_755457.1 | 3428779-3429330 | 552 | - | PapX protein | Virulence |
| 29 | papG | NP_755458.1 | 3429593-3430603 | 1011 | - | PapG protein | Virulence |
| 30 | papF | NP_755459.1 | 3430647-3431177 | 531 | - | PapF protein | Virulence |
| 31 | papE | NP_755460.1 | 3431222-3431761 | 540 | - | PapE protein | Virulence |
| 32 | papK | NP_755461.1 | 3431770-3432309 | 540 | - | PapK protein | Virulence |
| 33 | NA | NP_755462.1 | 3431915-3432529 | 615 | + | hypothetical protein | Virulence |
| 34 | papJ | NP_755463.1 | 3432316-3432897 | 582 | - | PapJ protein | Virulence |
| 35 | papD | NP_755464.1 | 3432934-3433539 | 606 | - | PapD protein | Virulence |
| 36 | papC | NP_755465.1 | 3433739-3436261 | 2523 | - | PapC protein | Virulence |
| 37 | papH | NP_755466.1 | 3436308-3436895 | 588 | - | PapH protein | Virulence |
| 38 | papA | NP_755467.1 | 3436965-3437564 | 600 | - | PapA protein | Virulence |
| 39 | papI | NP_755468.1 | 3438457-3438690 | 234 | + | PapI protein | Virulence |
| 40 | NA | NP_755469.1 | 3439254-3439772 | 519 | - | transposase | - |
| 41 | NA | NP_755470.1 | 3439784-3440140 | 357 | - | transposase | - |
| 42 | NA | NP_755471.1 | 3440140-3440466 | 327 | - | hypothetical protein | - |
| 43 | NA | NP_755472.1 | 3441312-3441902 | 591 | - | transposase | - |
| 44 | NA | NP_755473.1 | 3441905-3442066 | 162 | - | hypothetical protein | Virulence |
| 45 | NA | NP_755474.1 | 3442496-3442756 | 261 | + | hypothetical protein | Virulence |
| 46 | NA | NP_755475.1 | 3442798-3443358 | 561 | + | hypothetical protein | Virulence |
| 47 | NA | NP_755476.1 | 3443368-3443826 | 459 | + | hypothetical protein | Virulence |
| 48 | NA | NP_755477.1 | 3444379-3444594 | 216 | - | hypothetical protein | Virulence |
| 49 | NA | NP_755478.1 | 3444598-3444981 | 384 | - | hypothetical protein | Virulence |
| 50 | NA | NP_755479.1 | 3444661-3445062 | 402 | + | hypothetical protein | Virulence |
| 51 | NA | NP_755480.1 | 3444978-3445169 | 192 | - | hypothetical protein | Virulence |
| 52 | NA | NP_755481.1 | 3445257-3445577 | 321 | - | hypothetical protein | Virulence |
| 53 | NA | NP_755482.1 | 3445858-3447357 | 1500 | + | hypothetical protein | - |
| 54 | NA | NP_755483.1 | 3447354-3448109 | 756 | + | hypothetical protein | - |
| 55 | NA | NP_755484.1 | 3448318-3448542 | 225 | - | hypothetical protein | Virulence |
| 56 | NA | NP_755485.1 | 3448776-3450866 | 2091 | - | bifunctional enterobactin receptor/adhesin protein | Virulence |
| 57 | NA | NP_755486.1 | 3451366-3452271 | 906 | - | insertion element IS2 transposase InsD | - |
| 58 | NA | - | 3451371-3451890 | 520 | + | - | - |
| 59 | NA | NP_755487.1 | 3452264-3452638 | 375 | - | transposase insC | - |
| 60 | NA | - | 3452324-3452684 | 361 | + | - | - |
| 61 | NA | NP_755488.1 | 3452810-3452968 | 159 | + | hypothetical protein | Virulence |
| 62 | NA | NP_755489.1 | 3452972-3453157 | 186 | - | hypothetical protein | Virulence |
| 63 | NA | NP_755490.1 | 3453103-3454584 | 1482 | - | hypothetical protein | - |
| 64 | NA | NP_755491.1 | 3454615-3454965 | 351 | - | hypothetical protein | - |
| 65 | NA | NP_755492.1 | 3454962-3455399 | 438 | - | hypothetical protein | - |
| 66 | NA | NP_755493.1 | 3455734-3456432 | 699 | - | hypothetical protein | Virulence |
| 67 | sat | NP_755494.1 | 3456362-3460261 | 3900 | - | secreted auto transporter toxin | Virulence |
| 68 | NA | NP_755497.1 | 3460499-3460642 | 144 | + | hypothetical protein | Virulence |
| 69 | iutA | NP_755498.1 | 3461193-3463472 | 2280 | - | IutA protein | Virulence |
| 70 | iucD | NP_755499.1 | 3463394-3464731 | 1338 | - | IucD protein | Virulence |
| 71 | iucC | NP_755500.1 | 3464728-3466470 | 1743 | - | IucC protein | Virulence |
| 72 | iucB | NP_755501.1 | 3466470-3467417 | 948 | - | IucB protein | Virulence |
| 73 | iucA | NP_755502.1 | 3467418-3469205 | 1788 | - | IucA protein | Virulence |
| 74 | shiF | NP_755503.1 | 3469278-3470471 | 1194 | + | shiF protein | Virulence |
| 75 | NA | NP_755504.1 | 3469679-3469801 | 123 | - | hypothetical protein | - |
| 76 | NA | NP_755505.1 | 3470630-3471619 | 990 | - | hypothetical protein | - |
| 77 | NA | NP_755506.1 | 3471917-3472081 | 165 | - | hypothetical protein | - |
| 78 | NA | NP_755507.1 | 3472357-3472488 | 132 | - | hypothetical protein | - |
| 79 | NA | NP_755508.1 | 3472475-3473413 | 939 | - | hypothetical protein | - |
| 80 | NA | NP_755509.1 | 3473463-3474581 | 1119 | - | N-acetylneuraminic acid mutarotase | - |
| 81 | NA | NP_755510.1 | 3474585-3475325 | 741 | - | hypothetical protein | - |
| 82 | NA | NP_755511.1 | 3475341-3476150 | 810 | - | hypothetical protein | - |
| 83 | NA | NP_755512.2 | 3476175-3477647 | 1473 | - | sialic acid transporter | - |
| 84 | NA | NP_755513.1 | 3477696-3478571 | 876 | - | N-acetylmannosamine kinase | - |
| 85 | NA | NP_755514.1 | 3478605-3479522 | 918 | - | N-acetylneuraminate lyase | - |
| 86 | NA | NP_755515.1 | 3480253-3480615 | 363 | + | hypothetical protein | - |
| 87 | NA | NP_755516.1 | 3480612-3480962 | 351 | + | hypothetical protein | - |
| 88 | NA | NP_755517.1 | 3480627-3480971 | 345 | - | hypothetical protein | - |
| 89 | NA | NP_755518.1 | 3480993-3482093 | 1101 | + | hypothetical protein | - |
| 90 | NA | NP_755519.1 | 3481920-3482084 | 165 | - | hypothetical protein | - |
| 91 | NA | NP_755520.1 | 3482090-3483628 | 1539 | + | hypothetical protein | - |
| 92 | NA | NP_755521.1 | 3483544-3483738 | 195 | - | hypothetical protein | - |
| 93 | NA | NP_755522.1 | 3483812-3484267 | 456 | - | hypothetical protein | Virulence |
| 94 | NA | NP_755523.1 | 3484397-3484966 | 570 | - | hypothetical protein | Virulence |
| 95 | NA | NP_755524.1 | 3485694-3485918 | 225 | - | hemolysin expression modulating protein | - |
| 96 | NA | NP_755525.1 | 3486747-3487007 | 261 | + | hypothetical protein | Virulence |
| 97 | NA | NP_755526.1 | 3487066-3487665 | 600 | + | hypothetical protein | Virulence |
| 98 | NA | NP_755527.1 | 3487786-3489294 | 1509 | - | hypothetical protein | - |
| 99 | NA | NP_755528.1 | 3489471-3489692 | 222 | - | hypothetical protein | - |
| 100 | NA | NP_755529.1 | 3490608-3491480 | 873 | + | hypothetical protein | Virulence |
| 101 | NA | NP_755530.1 | 3491808-3494936 | 3129 | + | antigen 43 | Virulence |
| 102 | NA | NP_755531.1 | 3495115-3495444 | 330 | + | hypothetical protein | - |
| 103 | NA | NP_755532.1 | 3495431-3495823 | 393 | + | hypothetical protein | - |
| 104 | NA | NP_755533.1 | 3495830-3497431 | 1602 | + | hypothetical protein | - |
| 105 | NA | NP_755534.1 | 3497824-3498471 | 648 | + | hypothetical protein | - |
| 106 | NA | NP_755535.1 | 3498471-3498818 | 348 | + | hypothetical protein | - |
| 107 | NA | NP_755536.1 | 3498552-3498731 | 180 | - | hypothetical protein | - |
| 108 | NA | NP_755537.1 | 3498838-3499941 | 1104 | + | hypothetical protein | - |
| 109 | NA | NP_755538.1 | 3500024-3500404 | 381 | + | hypothetical protein | - |
| 110 | NA | NP_755539.1 | 3500527-3503049 | 2523 | + | hypothetical protein | Virulence |
| 111 | NA | NP_755540.1 | 3503125-3503580 | 456 | + | hypothetical protein | Virulence |
| 112 | NA | NP_755541.1 | 3503659-3503892 | 234 | + | hypothetical protein | Virulence |
| 113 | NA | NP_755542.1 | 3503701-3503889 | 189 | - | hypothetical protein | - |
| 114 | NA | NP_755543.1 | 3503993-3504811 | 819 | + | hypothetical protein | Virulence |
| 115 | NA | NP_755544.1 | 3504866-3505351 | 486 | + | hypothetical protein | Virulence |
| 116 | NA | NP_755545.1 | 3504920-3505831 | 912 | - | hypothetical protein | - |
| 117 | NA | NP_755546.1 | 3505352-3505843 | 492 | + | radC-like protein yeeS | Virulence |
| 118 | NA | NP_755547.1 | 3505840-3506568 | 729 | - | hypothetical protein | - |
| 119 | NA | NP_755548.1 | 3505906-3506127 | 222 | + | hypothetical protein | Virulence |
| 120 | NA | NP_755549.1 | 3506146-3506790 | 645 | + | hypothetical protein | - |
| 121 | NA | NP_755550.1 | 3506813-3507376 | 564 | - | hypothetical protein | - |
| 122 | NA | NP_755551.1 | 3506840-3507220 | 381 | + | hypothetical protein | Virulence |
| 123 | NA | NP_755552.1 | 3507297-3507674 | 378 | + | hypothetical protein | Virulence |
| 124 | NA | NP_755553.1 | 3507671-3508159 | 489 | + | hypothetical protein | Virulence |
| 125 | NA | NP_755554.1 | 3508176-3508373 | 198 | + | hypothetical protein | Virulence |
| 126 | NA | NP_755555.1 | 3508458-3509303 | 846 | + | hypothetical protein | Virulence |
| 127 | NA | NP_755556.1 | 3509372-3509767 | 396 | + | hypothetical protein | - |
| 128 | NA | NP_755557.1 | 3509760-3510677 | 918 | + | hypothetical protein | - |
| 129 | NA | NP_755558.1 | 3510482-3510694 | 213 | + | hypothetical protein | - |
| 130 | NA | NP_755559.1 | 3511126-3511281 | 156 | + | hypothetical protein | - |
| 131 | NA | NP_755560.1 | 3511449-3511592 | 144 | - | hypothetical protein | - |
| 132 | NA | NP_755561.1 | 3512056-3513075 | 1020 | + | hypothetical protein | Virulence |
| 133 | kpsE | NP_755562.1 | 3513147-3514295 | 1149 | + | KpsE protein | Virulence |
| 134 | kpsD | NP_755563.1 | 3514316-3515995 | 1680 | + | KpsD protein | Virulence |
| 135 | NA | NP_755564.1 | 3516005-3516745 | 741 | + | 3-deoxy-manno-octulosonate cytidylyltransferase | Virulence |
| 136 | kpsC | NP_755565.1 | 3516742-3518769 | 2028 | + | KpsC protein | Virulence |
| 137 | kpsS | NP_755566.1 | 3518804-3520042 | 1239 | + | KpsS protein | Virulence |
| 138 | NA | NP_755567.1 | 3520204-3521199 | 996 | - | hypothetical protein | - |
| 139 | NA | NP_755568.1 | 3521205-3522233 | 1029 | - | hypothetical protein | - |
| 140 | NA | NP_755569.1 | 3522336-3526136 | 3801 | - | hypothetical protein | - |
| 141 | NA | NP_755570.1 | 3526190-3527425 | 1236 | - | hypothetical protein | - |
| 142 | NA | NP_755571.1 | 3527441-3527848 | 408 | - | glycerol-3-phosphate cytidyltransferase | - |
| 143 | kpsT | NP_755572.1 | 3527848-3528519 | 672 | - | KpsT protein | Virulence |
| 144 | kpsM | NP_755573.1 | 3528516-3529292 | 777 | - | KpsM protein | Virulence |
| 145 | yghD | NP_755574.1 | 3530466-3531002 | 537 | - | general secretion pathway protein YghD | Virulence |
| 146 | yghE | - | 3531004-3531597 | 594 | - | - | - |
| 147 | NA | - | 3531570-3532181 | 612 | - | - | - |
| 148 | NA | NP_755575.1 | 3532178-3532591 | 414 | - | hypothetical protein | - |
| 149 | NA | NP_755576.1 | 3532771-3534120 | 1350 | - | transposase insG | - |
| 150 | yghK | NP_755577.1 | 3534256-3535938 | 1683 | - | glycolate transporter | - |
| 151 | glcB | NP_755578.1 | 3536293-3538464 | 2172 | - | malate synthase G | - |
| 152 | glcG | NP_755579.1 | 3538486-3538908 | 423 | - | hypothetical protein | - |
| 153 | NA | - | 3538895-3540232 | 1338 | - | - | - |
| 154 | NA | - | 3540129-3541181 | 1053 | - | - | - |
| 155 | glcD | NP_755580.1 | 3541181-3542680 | 1500 | - | glycolate oxidase subunit GlcD | - |
| 156 | glcC | NP_755581.1 | 3542871-3543695 | 825 | + | DNA-binding transcriptional regulator GlcC | - |
| 157 | yghO | NP_755582.1 | 3543702-3544910 | 1209 | - | hypothetical protein | - |
| 158 | NA | NP_755583.1 | 3545212-3546942 | 1731 | + | acyl-CoA synthetase | - |
| 159 | NA | NP_755584.1 | 3546939-3547853 | 915 | + | hypothetical protein | - |
| 160 | NA | NP_755585.1 | 3547885-3548133 | 249 | + | hypothetical protein | - |
| 161 | NA | NP_755586.1 | 3548133-3549305 | 1173 | + | hypothetical protein | - |
| 162 | NA | NP_755587.1 | 3549340-3550500 | 1161 | - | hypothetical protein | - |
| 163 | NA | NP_755588.1 | 3550416-3551486 | 1071 | - | hypothetical protein | - |
| 164 | NA | NP_755589.1 | 3551517-3552080 | 564 | - | hypothetical protein | - |
| 165 | NA | NP_755590.1 | 3552089-3552913 | 825 | - | hypothetical protein | - |