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Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Pseudomonas syringae DC3000 (NC_004578) Location : 1502395 - 1565062 bp Size : 62668 bp GC content : 57.7 % GC bias (=GCregion - GCgenome) : -0.71 % |
No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
1 | NA | NP_791191.1 | 1502395-1502811 | 417 | + | hypothetical protein | - |
2 | gstA | NP_791192.1 | 1502901-1503527 | 627 | + | glutathione S-transferase | Virulence |
3 | NA | NP_791193.1 | 1503611-1503772 | 162 | - | hypothetical protein | - |
4 | NA | NP_791194.1 | 1503935-1504381 | 447 | + | GNAT family acetyltransferase | - |
5 | NA | NP_791195.1 | 1504444-1504731 | 288 | - | lipoprotein | - |
6 | NA | - | 1504886-1504917 | 32 | + | - | - |
7 | shcN | NP_791196.1 | 1504948-1505427 | 480 | + | type III chaperone protein ShcN | Virulence |
8 | shcN | - | 1505219-1505251 | 33 | + | - | - |
9 | hopN1 | NP_791197.1 | 1505441-1506493 | 1053 | + | type III effector HopN1 | Virulence |
10 | NA | NP_791198.1 | 1506530-1507474 | 945 | - | effector locus protein | - |
11 | NA | - | 1507652-1507684 | 33 | + | - | - |
12 | hopAA1-1 | NP_791199.1 | 1507846-1509306 | 1461 | + | type III effector HopAA1-1 | Virulence |
13 | hrpW1 | NP_791200.1 | 1509390-1510664 | 1275 | - | type III helper protein HrpW1 | - |
14 | NA | - | 1510785-1510816 | 32 | - | - | - |
15 | NA | - | 1510881-1510913 | 33 | + | - | - |
16 | shcM | NP_791201.1 | 1510970-1511464 | 495 | + | type III chaperone ShcM | Virulence |
17 | hopM1 | NP_791202.1 | 1511461-1513599 | 2139 | + | type III effector HopM1 | Virulence |
18 | shcE | NP_791203.1 | 1513672-1514067 | 396 | + | type III chaperone ShcE | Virulence |
19 | avrE1 | NP_791204.1 | 1514116-1519503 | 5388 | - | type III effector protein AvrE1 | Virulence |
20 | NA | - | 1519570-1519601 | 32 | - | - | - |
21 | NA | - | 1519666-1519697 | 32 | + | - | - |
22 | hrpH | NP_791205.1 | 1519724-1521211 | 1488 | + | membrane-bound lytic murein transglycosylase D | Virulence |
23 | hrpR | NP_791206.1 | 1522289-1523233 | 945 | + | type III transcriptional regulator HrpR | Virulence |
24 | hrpS | NP_791207.1 | 1523279-1524187 | 909 | + | type III transcriptional regulator HrpS | Virulence |
25 | NA | - | 1524204-1524236 | 33 | + | - | - |
26 | hrpA1 | NP_791208.1 | 1524281-1524622 | 342 | + | type III helper protein HrpA1 | Virulence |
27 | hrpZ1 | NP_791209.1 | 1524678-1525790 | 1113 | + | type III restriction system endonuclease | Virulence |
28 | hrpB | NP_791210.1 | 1525818-1526192 | 375 | + | type III secretion protein HrpB | Virulence |
29 | hrcJ | NP_791211.1 | 1526201-1527007 | 807 | + | type III secretion protein HrcJ | Virulence |
30 | hrpD | NP_791212.1 | 1527004-1527534 | 531 | + | type III secretion protein HrpD | Virulence |
31 | hrpE | NP_791213.1 | 1527570-1528151 | 582 | + | type III secretion protein HrpE | Virulence |
32 | NA | - | 1528184-1528216 | 33 | + | - | - |
33 | hrpF | NP_791214.1 | 1528246-1528470 | 225 | + | type III secretion protein HrpF | Virulence |
34 | hrpG | NP_791215.1 | 1528457-1528888 | 432 | + | type III secretion protein HrpG | Virulence |
35 | hrcC | NP_791216.2 | 1528890-1530989 | 2100 | + | outer-membrane type III secretion protein HrcC | Virulence |
36 | hrpT | NP_791217.1 | 1530986-1531189 | 204 | + | type III secretion protein | Virulence |
37 | hrpV | NP_791218.1 | 1531192-1531551 | 360 | + | negative regulator of hrp expression HrpV | Virulence |
38 | hrcU | NP_791219.1 | 1532093-1533172 | 1080 | - | type III secretion protein HrcU | Virulence |
39 | hrcT | NP_791220.1 | 1533169-1533963 | 795 | - | type III secretion protein HrcT | Virulence |
40 | hrcS | NP_791221.1 | 1533964-1534230 | 267 | - | type III secretion protein HrcS | Virulence |
41 | hrcR | NP_791222.3 | 1534238-1534840 | 603 | - | type III secretion protein HrcR | Virulence |
42 | hrcQb | NP_791223.1 | 1534888-1535301 | 414 | - | type III secretion protein HrcQb | Virulence |
43 | hrcQa | NP_791224.1 | 1535291-1536007 | 717 | - | type III secretion protein HrcQa | Virulence |
44 | hrpP | NP_791225.1 | 1536004-1536573 | 570 | - | type III secretion protein HrpP | Virulence |
45 | hrpO | NP_791226.1 | 1536580-1537026 | 447 | - | type III secretion protein HrpO | Virulence |
46 | hrpO | - | 1536874-1536905 | 32 | - | - | - |
47 | hrcN | NP_791227.1 | 1537029-1538378 | 1350 | - | type III secretion cytoplasmic ATPase HrcN | Virulence |
48 | hrpQ | NP_791228.1 | 1538375-1539367 | 993 | - | type III secretion protein HrpQ | Virulence |
49 | hrcV | NP_791229.1 | 1539401-1541488 | 2088 | - | type III secretion protein HrcV | Virulence |
50 | hrpJ | NP_791230.1 | 1541488-1542594 | 1107 | - | type III secretion protein HrpJ | Virulence |
51 | NA | - | 1542129-1542182 | 54 | + | - | - |
52 | NA | - | 1542621-1542653 | 33 | - | - | - |
53 | hrpL | NP_791231.1 | 1542838-1543392 | 555 | + | RNA polymerase sigma factor HrpL | - |
54 | NA | - | 1543416-1543447 | 32 | + | - | - |
55 | hrpK1 | NP_791232.1 | 1543479-1545821 | 2343 | + | type III helper protein HrpK1 | Virulence |
56 | hopB1 | NP_791233.1 | 1545896-1547296 | 1401 | + | type III effector HopB1 | Virulence |
57 | NA | YP_003355052.1 | 1547542-1548381 | 840 | - | ISPssy transposase or derivative | - |
58 | NA | - | 1548389-1548420 | 32 | + | - | - |
59 | NA | YP_003355053.1 | 1548470-1548718 | 249 | + | hypothetical protein | - |
60 | NA | NP_791234.1 | 1548919-1549104 | 186 | + | hypothetical protein | - |
61 | NA | NP_791235.1 | 1549288-1550133 | 846 | + | hypothetical protein | - |
62 | NA | NP_791236.1 | 1550627-1551043 | 417 | + | exchangeable effector locus protein | - |
63 | NA | NP_791237.1 | 1551198-1551773 | 576 | - | hypothetical protein | - |
64 | tRNA-Leu | - | 1551777-1551861 | 85 | - | tRNA-Leu | - |
65 | queA | NP_791238.1 | 1551979-1553043 | 1065 | + | S-adenosylmethionine--tRNA ribosyltransferase-isomerase | - |
66 | tgt | NP_791239.1 | 1553058-1554173 | 1116 | + | queuine tRNA-ribosyltransferase | - |
67 | yajC | NP_791240.1 | 1554227-1554562 | 336 | + | preprotein translocase subunit YajC | - |
68 | secD | NP_791241.1 | 1554625-1556493 | 1869 | + | protein-export membrane protein SecD | - |
69 | secF | NP_791242.1 | 1556503-1557414 | 912 | + | protein-export membrane protein SecF | - |
70 | NA | NP_791243.1 | 1557523-1558062 | 540 | + | hypothetical protein | - |
71 | NA | NP_791244.1 | 1558205-1559665 | 1461 | - | ISPsy6, transposase | - |
72 | suhB | NP_791245.1 | 1559737-1560552 | 816 | - | inositol-1-monophosphatase | - |
73 | NA | NP_791246.1 | 1560768-1561541 | 774 | + | RNA methyltransferase, TrmH family, group 1 | - |
74 | cysE | NP_791247.1 | 1561541-1562317 | 777 | + | serine O-acetyltransferase | - |
75 | NA | NP_791248.1 | 1562477-1562968 | 492 | + | rrf2 family protein | - |
76 | iscS-2 | NP_791249.1 | 1563013-1564227 | 1215 | + | cysteine desulfurase | - |
77 | iscU | NP_791250.1 | 1564310-1564696 | 387 | + | iron-binding protein IscU | - |
78 | iscA | NP_791251.1 | 1564739-1565062 | 324 | + | iron-binding protein IscA | - |