PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Shigella flexneri 2457T (NC_004741)
Location : 219312 - 241633 bp
Size : 22322 bp
GC content : 51.7 %
GC bias (=GCregion - GCgenome) : 0.76 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 219312-219388 77 + tRNA-Asp-
2dkgB NP_835929.1 219551-220354 804 + 2,5-diketo-D-gluconate reductase B-
3NA NP_835930.1 220393-221721 1329 - IS4 orf-
4yafC NP_835931.1 221789-222703 915 - transcriptional regulator LYSR-type-
5yafD NP_835932.1 222944-223744 801 + hypothetical protein-
6yafE NP_835933.1 223972-224592 621 + biotin synthesis protein-
7mltD NP_835934.1 224640-225986 1347 - membrane-bound lytic murein transglycosylase D-
8gloB NP_835935.1 226058-226813 756 - hydroxyacylglutathione hydrolase-
9yafS NP_835936.1 226844-227569 726 + hypothetical protein-
10rnhA NP_835937.1 227566-228033 468 - ribonuclease H-
11dnaQ NP_835938.1 228098-228829 732 + DNA polymerase III subunit epsilon-
12tRNA-Asp - 228962-229038 77 + tRNA-Asp-
13safA NP_835939.1 229169-230215 1047 - hypothetical protein-
14NA NP_835940.1 230226-230339 114 - hypothetical protein-
15safB NP_835941.1 230483-230788 306 - periplasmic chaperone of fimbral assembly machinery-
16safC NP_835942.1 230785-232668 1884 - outer membrane usher proteinVirulence
17NA NP_835943.1 232684-233178 495 - hypothetical protein-
18sat1 NP_835944.1 233373-234005 633 - hypothetical protein-
19sat2 NP_835945.1 233992-234369 378 - hypothetical protein-
20NA NP_835946.1 234607-234906 300 - hypothetical protein-
21NA NP_835947.1 234959-235369 411 + insertion sequence 2 OrfA protein-
22NA NP_835948.1 235327-236232 906 + insertion element IS2 transposase InsD-
23NA NP_835949.1 236654-236956 303 + IS911 orfA-
24NA NP_835950.1 236983-237822 840 + IS911 orfB-
25NA NP_835952.1 238511-238780 270 - endolysin R of prophage CP-933V-
26NA NP_835953.1 239101-239415 315 - hypothetical protein-
27NA NP_835954.1 239420-239635 216 - lysis protein S-
28NA NP_835955.1 239992-240366 375 + hypothetical protein-
29NA NP_835956.1 240390-240797 408 - hypothetical protein-
30NA NP_835957.1 240794-241846 1053 - IS911 orfA-
31NA NP_835958.1 240794-241633 840 - IS911 orfB-


tRNA-Asp tRNA-Asp PI: Esc.18aec50 aec49 aec66 aec65 aec65 PI: Esc.13.NC_013364_P1ECO111_3773 ECO111_3778 ECO111_3779 ECO111_3779 PI: Psea.13RS05 RS04 RS04 RS04 PI: Pro.1.5orfA orfB orfB orfB PI: Pro.1.7orfA orfB orfB orfB PI: Pro.1.3- overlap with orfA characteristic of IS3 family members overlap with orfA characteristic of IS3 family members overlap with orfA characteristic of IS3 family members PI: Pro.1.6orfA orfB orfB orfB PI: Sal.19.2orfA orfB orfB orfB PI: Sal.6.NC_003198_P1-STY0289 STY0290 STY0291 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -PI: Vib.2VPI2_0009c VPI2_0008c VPI2_0008c VPI2_0008c PI: Vib.2.NC_002505_P5VC1790 VC1789 VC1789 VC1789 PI: Vib.2.NC_009457_P3orfA orfB orfB orfB

• PAIs homologous to this region

LEE (Escherichia coli 11128)
AGI-3 (Escherichia coli BEN2908)
tcd island (Photorhabdus luminescens W14)
SGI1 (Proteus mirabilis PmSCO)
SGI1 (Proteus mirabilis PmABB)
SGI1 (Proteus mirabilis PmVER)
SGI1 (Proteus mirabilis PmGUE)
PAPI-2 (Pseudomonas aeruginosa PA14)
SGI1 (Salmonella enterica SRC73)
SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18)
VPI-2 (Vibrio cholerae Amazonia 3509)
VPI-2 (Vibrio cholerae O1 biovar eltor str. N16961)
VPI-2 (Vibrio cholerae O395)