PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Shigella flexneri 2457T (NC_004741)
Location : 3044640 - 3115039 bp
Size : 70400 bp
GC content : 49.5 %
GC bias (=GCregion - GCgenome) : -1.4 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Phe - 3044640-3044715 76 + tRNA-Phe-
2NA NP_838459.1 3044913-3046175 1263 + P4-type integrase-
3NA NP_838460.1 3046628-3050143 3516 + superfamily I DNA helicaseVirulence
4NA - 3050283-3050498 216 + --
5NA NP_838461.1 3051492-3052253 762 + hypothetical proteinVirulence
6sigA NP_838462.1 3052614-3056471 3858 + serine proteaseVirulence
7NA NP_838463.1 3059545-3059763 219 + hypothetical protein-
8pic NP_838464.1 3059914-3063126 3213 - serine protease precurserVirulence
9NA NP_838465.1 3064760-3065593 834 - reverse transcriptase-like protein-
10NA NP_838466.1 3065587-3066267 681 - reverse transcriptase-like protein-
11NA NP_838467.1 3067353-3067679 327 - IS629 orfA-
12NA NP_838468.1 3067962-3068387 426 - hypothetical proteinVirulence
13NA NP_838469.1 3068384-3068767 384 - hypothetical proteinVirulence
14NA NP_838470.1 3069140-3069739 600 - hypothetical proteinVirulence
15NA NP_838471.2 3070456-3070821 366 + insertion sequence 2 OrfA protein-
16NA NP_838472.2 3070779-3071684 906 + insertion element IS2 transposase InsD-
17NA NP_838473.1 3073538-3073744 207 + hypothetical proteinVirulence
18NA NP_838474.1 3073830-3074402 573 + hypothetical proteinVirulence
19NA NP_838475.1 3074404-3074688 285 - hypothetical protein-
20NA NP_838476.1 3075971-3076990 1020 + hypothetical proteinVirulence
21sap NP_838477.1 3077100-3077972 873 + hypothetical proteinVirulence
22NA NP_838478.1 3078306-3079199 894 + outer membrane fluffing protein-
23NA NP_838479.1 3079305-3081425 2121 + outer membrane fluffing proteinVirulence
24NA NP_838480.1 3081546-3084062 2517 + hypothetical proteinVirulence
25NA NP_838481.1 3084138-3084593 456 + hypothetical proteinVirulence
26NA NP_838482.1 3085004-3085822 819 + hypothetical proteinVirulence
27NA NP_838483.1 3086164-3086637 474 + hypothetical proteinVirulence
28yeeS NP_838484.1 3086638-3087129 492 + RADC family DNA repair proteinVirulence
29yeeT NP_838485.1 3087216-3087437 222 + hypothetical proteinVirulence
30yeeU NP_838486.1 3087517-3087894 378 + structural proteinVirulence
31yeeV NP_838487.1 3087941-3088318 378 + hypothetical proteinVirulence
32yeeW NP_838488.1 3088315-3088803 489 + hypothetical proteinVirulence
33NA NP_838489.1 3089105-3089947 843 + hypothetical proteinVirulence
34NA NP_838490.1 3091372-3091671 300 + IS3 orfA-
35NA NP_838491.1 3091668-3092534 867 + IS3 orfB-
36NA NP_838492.1 3093171-3093410 240 - hypothetical protein-
37NA NP_838493.1 3093545-3094150 606 - hypothetical protein-
38NA NP_838494.1 3094265-3094768 504 - IS1 orfB-
39NA NP_838495.1 3094687-3094962 276 - IS1 orfA-
40yghK NP_838496.1 3096365-3097951 1587 - permease-
41glcB NP_838497.1 3098306-3100477 2172 - malate synthase G-
42glcG NP_838498.1 3100499-3100903 405 - hypothetical protein-
43glcF - 3100908-3103190 2283 - --
44glcD - 3103190-3104689 1500 - --
45glcC NP_838499.1 3104940-3105710 771 + DNA-binding transcriptional regulator GlcC-
46NA - 3105834-3106948 1115 - --
47NA NP_838500.1 3107379-3109067 1689 + acyl-CoA synthetase-
48NA NP_838501.1 3109082-3109978 897 + hypothetical protein-
49NA NP_838502.1 3110011-3110259 249 + hypothetical protein-
50NA NP_838503.1 3110259-3110609 351 + class II aminotransferase-
51NA NP_838504.1 3110642-3111430 789 + class II aminotransferase-
52NA NP_838505.1 3111466-3112545 1080 - hypothetical protein-
53NA NP_838506.1 3112542-3113612 1071 - hypothetical protein-
54NA NP_838507.1 3113643-3114203 561 - hypothetical protein-
55NA NP_838508.1 3114215-3115039 825 - hypothetical protein-


tRNA-Phe NA