PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Salmonella enterica SC-B67 (NC_006905)
Location : 290736 - 326505 bp
Size : 35770 bp
GC content : 54.0 %
GC bias (=GCregion - GCgenome) : 1.87 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 290736-290812 77 + tRNA-Asp-
2dkgB YP_215238.1 290977-291780 804 + 2,5-diketo-D-gluconate reductase B-
3yafC YP_215239.1 291802-292716 915 - LysR family transcriptional regulator-
4ydhP YP_215240.1 292821-293996 1176 + drug efflux protein-
5yafD YP_215241.1 294128-294928 801 + hypothetical protein-
6yafE YP_215242.1 295006-295776 771 + methyltransferase in menaquinone/biotin biosynthesis-
7mltD YP_215243.1 295832-297199 1368 - membrane-bound lytic murein transglycosylase D-
8gloB YP_215244.1 297271-298026 756 - hydroxyacylglutathione hydrolase-
9yafS YP_215245.1 298061-298783 723 + hypothetical protein-
10rnhA YP_215246.2 298780-299247 468 - ribonuclease H-
11dnaQ YP_215247.1 299302-300042 741 + DNA polymerase III subunit epsilon-
12tRNA-Asp - 300176-300252 77 + tRNA-Asp-
13NA YP_215248.1 300574-301629 1056 - hypothetical protein-
14NA YP_215249.1 301640-302635 996 - hypothetical protein-
15NA YP_215250.1 302632-304515 1884 - hypothetical proteinVirulence
16NA YP_215251.1 304531-305025 495 - hypothetical protein-
17NA YP_215252.1 305022-305771 750 - hypothetical protein-
18NA YP_215253.1 305833-306735 903 - hypothetical protein-
19NA - 307102-309741 2640 + --
20NA YP_215255.1 309841-310383 543 + hypothetical proteinVirulence
21sirA YP_215256.1 310407-311915 1509 + hypothetical proteinVirulence
22NA YP_215257.1 311982-312368 387 + hypothetical protein-
23NA YP_215258.1 312381-312827 447 + hypothetical protein-
24NA YP_215259.1 313079-313564 486 + hypothetical proteinVirulence
25NA YP_215260.1 313631-314167 537 + outer membrane lipoprotein-
26NA YP_215261.1 314171-315514 1344 + hypothetical protein-
27NA YP_215262.1 315511-316815 1305 + hypothetical protein-
28NA YP_215263.1 316820-317593 774 + inner membrane protein-
29NA YP_215264.1 317783-318226 444 + shiga-like toxin A subunit-
30NA YP_215265.1 318260-322129 3870 + inner membrane protein-
31NA YP_215266.1 322129-322917 789 + hypothetical protein-
32NA YP_215267.1 322914-323330 417 + hypothetical protein-
33NA YP_215268.1 323354-323875 522 + hypothetical protein-
34NA YP_215269.1 324271-326505 2235 + Rhs-family protein-


tRNA-Asp tRNA-Asp PI: Sal.6.NC_003198_P1-STY0288 STY0289 STY0290 STY0291 STY0292 STY0294 STY0297 STY0300 STY0302 STY0303 STY0304 STY0305 STY0306 STY0310 STY0316 STY0317 STY0319 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -

• PAIs homologous to this region

tcd island (Photorhabdus luminescens W14)
SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18)