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Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Pseudomonas syringae B728a (NC_007005) Location : 1329470 - 1396849 bp Size : 67380 bp GC content : 58.3 % GC bias (=GCregion - GCgenome) : -0.96 % |
No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
1 | NA | YP_234267.1 | 1329470-1330096 | 627 | + | glutathione S-transferase | Virulence |
2 | NA | YP_234268.1 | 1330328-1331164 | 837 | - | integrase catalytic subunit | - |
3 | NA | YP_234269.1 | 1331164-1331703 | 540 | - | ISPsy9, transposase OrfA | - |
4 | NA | YP_234270.1 | 1332053-1332214 | 162 | - | hypothetical protein | - |
5 | NA | YP_234271.1 | 1332278-1334023 | 1746 | - | OPT superfamily oligopeptide transporter | - |
6 | NA | YP_234272.1 | 1334228-1334713 | 486 | - | hypothetical protein | - |
7 | NA | YP_234273.1 | 1334788-1335075 | 288 | - | hypothetical protein | - |
8 | NA | YP_234274.1 | 1335471-1336415 | 945 | - | hypothetical protein | - |
9 | NA | YP_234275.1 | 1336758-1338209 | 1452 | + | type III effector HopAA1 | Virulence |
10 | NA | YP_234276.1 | 1338293-1339618 | 1326 | - | type III helper protein HrpW1 | - |
11 | NA | YP_234277.1 | 1339922-1340416 | 495 | + | effector locus protein | Virulence |
12 | NA | YP_234278.1 | 1340413-1342569 | 2157 | + | type III effector HopM1 | Virulence |
13 | NA | YP_234279.1 | 1342667-1343056 | 390 | + | hypothetical protein | Virulence |
14 | AvrE1 | YP_234280.1 | 1343119-1348479 | 5361 | - | type III effector protein AvrE1 | Virulence |
15 | NA | YP_234281.1 | 1348699-1350222 | 1524 | + | hypothetical protein | Virulence |
16 | HrpR | YP_234282.1 | 1351297-1352241 | 945 | + | type III transcriptional regulator HrpR | Virulence |
17 | HrpS | YP_234283.1 | 1352287-1353195 | 909 | + | type III transcriptional regulator HrpS | Virulence |
18 | HrpA2 | YP_234284.1 | 1353288-1353614 | 327 | + | type III helper protein HrpA2 | Virulence |
19 | NA | YP_234285.1 | 1353667-1354698 | 1032 | + | type III restriction system endonuclease | Virulence |
20 | HrpB | YP_234286.1 | 1354726-1355100 | 375 | + | type III secretion protein HrpB | Virulence |
21 | HrcJ | YP_234287.1 | 1355109-1355915 | 807 | + | type III secretion protein HrcJ | Virulence |
22 | NA | YP_234288.1 | 1355915-1356442 | 528 | + | type III secretion protein HrpD | Virulence |
23 | HrpE | YP_234289.1 | 1356477-1357058 | 582 | + | type III secretion protein HrpE | Virulence |
24 | HrpF | YP_234290.1 | 1357142-1357366 | 225 | + | type III secretion protein HrpF | Virulence |
25 | NA | YP_234291.1 | 1357344-1357784 | 441 | + | type III secretion protein HrpG | Virulence |
26 | HrcC | YP_234292.1 | 1357786-1359888 | 2103 | + | outer-membrane type III secretion protein HrcC | Virulence |
27 | NA | YP_234293.1 | 1359885-1360088 | 204 | + | type III secretion protein HrpT | Virulence |
28 | NA | YP_234294.1 | 1360091-1360438 | 348 | + | negative regulator of hrp expression HrpV | Virulence |
29 | NA | YP_234295.1 | 1361041-1361901 | 861 | - | hypothetical protein | - |
30 | NA | YP_234296.1 | 1361898-1363601 | 1704 | - | hypothetical protein | - |
31 | HrcU | YP_234297.1 | 1364133-1365212 | 1080 | - | type III secretion protein HrcU | Virulence |
32 | HrcT | YP_234298.1 | 1365209-1366003 | 795 | - | type III secretion protein HrcT | Virulence |
33 | HrcS | YP_234299.1 | 1366004-1366270 | 267 | - | type III secretion protein HrcS | Virulence |
34 | HrcR | YP_234300.1 | 1366278-1366931 | 654 | - | type III secretion system protein | Virulence |
35 | HrcQb | YP_234301.1 | 1366928-1367326 | 399 | - | type III secretion protein HrcQb | Virulence |
36 | NA | YP_234302.1 | 1367316-1368032 | 717 | - | type III secretion protein HrcQa | Virulence |
37 | NA | YP_234303.1 | 1368029-1368601 | 573 | - | type III secretion protein HrpP | Virulence |
38 | NA | YP_234304.1 | 1368608-1369054 | 447 | - | type III secretion protein HrpO | Virulence |
39 | HrcN | YP_234305.1 | 1369057-1370406 | 1350 | - | type III secretion cytoplasmic ATPase HrcN | Virulence |
40 | NA | YP_234306.1 | 1370403-1371377 | 975 | - | type III secretion protein HrpQ | Virulence |
41 | NA | YP_234307.1 | 1371411-1373498 | 2088 | - | Type III secretion protein HrcV | Virulence |
42 | NA | YP_234308.1 | 1373498-1374679 | 1182 | - | type III secretion protein HrpJ | Virulence |
43 | NA | YP_234309.1 | 1374846-1375400 | 555 | + | sigma-70 region 2:sigma-70 region 4 | Virulence |
44 | NA | YP_234310.1 | 1375465-1377777 | 2313 | + | type III helper protein HrpK1 | Virulence |
45 | AvrB3 | YP_234311.2 | 1377971-1378942 | 972 | + | type III effector protein AvrB3 | - |
46 | NA | YP_234312.1 | 1379091-1380239 | 1149 | + | type III effector HopX1 | - |
47 | NA | - | 1380378-1381406 | 1029 | - | - | - |
48 | NA | - | 1381441-1381911 | 471 | - | - | - |
49 | NA | - | 1381929-1382288 | 360 | - | - | - |
50 | NA | YP_234313.1 | 1382497-1383732 | 1236 | - | type III effector HopZ3 | - |
51 | NA | YP_234314.1 | 1383729-1384181 | 453 | - | hypothetical protein | - |
52 | NA | YP_234315.1 | 1384596-1384949 | 354 | - | hypothetical protein | - |
53 | tRNA-Leu | - | 1385152-1385236 | 85 | - | tRNA-Leu | - |
54 | queA | YP_234316.1 | 1385354-1386418 | 1065 | + | S-adenosylmethionine--tRNA ribosyltransferase-isomerase | - |
55 | tgt | YP_234317.1 | 1386415-1387548 | 1134 | + | queuine tRNA-ribosyltransferase | - |
56 | yajC | YP_234318.1 | 1387602-1387937 | 336 | + | preprotein translocase subunit YajC | - |
57 | secD | YP_234319.1 | 1388001-1389869 | 1869 | + | preprotein translocase subunit SecD | - |
58 | secF | YP_234320.1 | 1389879-1390790 | 912 | + | preprotein translocase subunit SecF | - |
59 | NA | YP_234321.1 | 1390899-1391438 | 540 | + | hypothetical protein | - |
60 | NA | YP_234322.1 | 1391505-1392320 | 816 | - | inositol monophosphatase | - |
61 | NA | YP_234323.1 | 1392536-1393300 | 765 | + | RNA methyl transferase TrmH | - |
62 | NA | YP_234324.1 | 1393300-1394076 | 777 | + | Serine O-acetyltransferase | - |
63 | NA | YP_234325.1 | 1394236-1394727 | 492 | + | transcription factor IscR | - |
64 | iscS | YP_234326.1 | 1394772-1395986 | 1215 | + | cysteine desulfurase | - |
65 | NA | YP_234327.1 | 1396068-1396454 | 387 | + | scaffold protein | - |
66 | NA | YP_234328.1 | 1396526-1396849 | 324 | + | iron-sulfur cluster assembly protein IscA | - |