PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Shigella dysenteriae Sd197 (NC_007606)
Location : 944740 - 973495 bp
Size : 28756 bp
GC content : 51.4 %
GC bias (=GCregion - GCgenome) : 0.18 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1insA YP_402651.1 944740-945015 276 + IS1 ORF1-
2insB YP_402652.1 945060-945437 378 + IS1 ORF2-
3NA YP_402653.1 945448-945732 285 - iso-IS1 ORF2-
4NA - 945455-946088 634 - --
5csgD - 946090-946485 396 + --
6csgE YP_402654.1 946490-946879 390 + curli assembly protein CsgEVirulence
7csgF YP_402655.1 946904-947320 417 + curli assembly protein CsgFVirulence
8csgG YP_402656.1 947347-948180 834 + curli production assembly/transport componentVirulence
9NA YP_402657.1 948571-948966 396 + iso-IS1 ORF2-
10ycdZ YP_402658.1 949018-949557 540 - hypothetical protein-
11ycdY YP_402659.1 949611-950165 555 - oxidoreductase-
12ycdX YP_402660.1 950189-950926 738 - hydrolase-
13ycdW YP_402661.1 950981-951958 978 - dehydrogenase-
14tRNA-Ser - 952153-952240 88 + tRNA-Ser-
15NA YP_402662.1 952390-953232 843 - hypothetical proteinVirulence
16NA YP_402663.1 953329-953526 198 - hypothetical proteinVirulence
17NA YP_402664.1 953538-954029 492 - hypothetical proteinVirulence
18yeeV YP_402665.1 954026-954400 375 - hypothetical proteinVirulence
19yeeU YP_402666.1 954447-954824 378 - structural proteinVirulence
20NA YP_402667.1 954874-955518 645 - hypothetical protein-
21yeeT YP_402668.1 955537-955758 222 - hypothetical proteinVirulence
22NA YP_402669.1 955827-956279 453 - radC-like protein yeeSVirulence
23NA YP_402670.1 956295-956840 546 - hypothetical proteinVirulence
24NA YP_402671.1 957048-957869 822 - hypothetical proteinVirulence
25NA YP_402672.1 958263-958526 264 - hypothetical protein-
26NA YP_402673.1 959177-959644 468 - hypothetical protein-
27NA - 960074-961246 1173 + --
28NA YP_402674.1 960581-961423 843 + IS600 ORF2-
29NA YP_402675.2 961257-962162 906 - insertion element IS2 transposase InsD-
30NA YP_402676.1 962120-962485 366 - insertion sequence 2 OrfA protein-
31NA - 962572-962673 102 + --
32NA YP_402677.1 963197-963592 396 - iso-IS1 ORF2-
33iroN YP_402678.1 963985-966162 2178 + outer membrane receptor FepAVirulence
34iroE YP_402679.1 966207-967163 957 - hypothetical proteinVirulence
35iroD YP_402680.1 967248-968477 1230 - ferric enterochelin esteraseVirulence
36iroC YP_402681.1 968581-972240 3660 - ABC transporter proteinVirulence
37iroB YP_402682.1 972380-973495 1116 - glycosyl transferaseVirulence


NA tRNA-Ser NA NA