PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli UTI89 (NC_007946)
Location : 1096409 - 1142619 bp
Size : 46211 bp
GC content : 48.9 %
GC bias (=GCregion - GCgenome) : -1.73 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA YP_540119.1 1096409-1096921 513 + hypothetical proteinVirulence
2NA YP_540120.1 1096433-1096609 177 - hypothetical protein-
3NA YP_540121.1 1097163-1097732 570 + hypothetical protein-
4sfaC YP_540122.1 1098007-1098291 285 - S fimbrial switch regulatory proteinVirulence
5sfaB YP_540123.1 1098647-1098976 330 + S fimbrial switch regulatory proteinVirulence
6sfaA YP_540124.1 1099351-1099896 546 + S fimbriae major subunit SfaAVirulence
7sfaD YP_540125.1 1099958-1100506 549 + S fimbriae minor subunit SfaDVirulence
8sfaE YP_540126.1 1100547-1101242 696 + S fimbriae periplasmic chaperone SfaEVirulence
9sfaF YP_540127.1 1101264-1103942 2679 + S fimbriae outer membrane usherVirulence
10sfaG YP_540128.1 1103955-1104482 528 + S fimbriae minor subunit SfaGVirulence
11sfaS YP_540129.1 1104504-1104995 492 + S fimbriae minor subunit SfaSVirulence
12sfaH YP_540130.1 1104988-1105956 969 + S fimbriae minor subunit SfaHVirulence
13NA YP_540131.1 1106260-1107000 741 + hypothetical protein-
14focX YP_540132.1 1107147-1107698 552 + regulatory proteinVirulence
15iroN YP_540133.1 1108192-1110369 2178 + outer membrane receptor FepAVirulence
16iroE YP_540134.1 1110414-1111370 957 - IroE proteinVirulence
17iroD YP_540135.1 1111455-1112684 1230 - IroD proteinVirulence
18iroC YP_540136.1 1112788-1116573 3786 - IroC proteinVirulence
19iroB YP_540137.1 1116587-1117750 1164 - glucosyltransferaseVirulence
20NA YP_540138.1 1118244-1118558 315 + hypothetical protein-
21NA YP_540139.1 1118597-1118959 363 - hypothetical protein-
22NA YP_540140.1 1119826-1120260 435 + hypothetical protein-
23tRNA-Arg - 1120468-1120541 74 + tRNA-Arg-
24NA YP_540141.1 1120823-1121281 459 - transposase-
25NA YP_540142.1 1121293-1122186 894 - hypothetical proteinVirulence
26NA YP_540143.1 1122532-1124502 1971 + outer membrane heme/hemoglobin receptorVirulence
27NA YP_540144.1 1124521-1125312 792 + hypothetical proteinVirulence
28NA YP_540145.1 1125513-1126775 1263 + hypothetical proteinVirulence
29NA YP_540146.1 1126882-1127064 183 - hypothetical proteinVirulence
30NA YP_540147.1 1127725-1128861 1137 + hypothetical protein-
31NA YP_540148.1 1129663-1129989 327 - hypothetical protein-
32NA YP_540149.1 1130377-1130736 360 - hypothetical protein-
33NA YP_540150.1 1130945-1131274 330 - hypothetical protein-
34NA YP_540151.1 1131288-1131593 306 - hypothetical protein-
35NA YP_540152.1 1132408-1133280 873 + hypothetical proteinVirulence
36NA YP_540153.1 1133653-1136499 2847 + autotransporterVirulence
37yafZ1 YP_540154.1 1136830-1137651 822 + hypothetical proteinVirulence
38NA YP_540155.1 1136836-1137693 858 - hypothetical protein-
39NA YP_540156.1 1137672-1137896 225 + hypothetical protein-
40yafX1 YP_540157.1 1137918-1138463 546 + hypothetical proteinVirulence
41NA YP_540158.1 1137984-1138943 960 - hypothetical protein-
42yeeS3 YP_540159.1 1138479-1138955 477 + radC-like protein YeeSVirulence
43yeeT3 YP_540160.1 1139018-1139239 222 + hypothetical proteinVirulence
44NA YP_540161.1 1139258-1139902 645 + hypothetical protein-
45NA YP_540162.1 1139862-1140329 468 + intergenic-region proteinVirulence
46NA YP_540163.1 1140376-1140750 375 + hypothetical proteinVirulence
47NA YP_540164.1 1140750-1141238 489 + hypothetical proteinVirulence
48NA YP_540165.1 1141250-1141447 198 + hypothetical proteinVirulence
49NA YP_540166.1 1141540-1142382 843 + hypothetical proteinVirulence
50tRNA-Ser - 1142535-1142619 85 - tRNA-Ser-


tRNA-Arg tRNA-Ser