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Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Escherichia coli APEC O1 (NC_008563) Location : 3305017 - 3414778 bp Size : 109762 bp GC content : 47.6 % GC bias (=GCregion - GCgenome) : -2.92 % |
No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
1 | tRNA-Phe | - | 3305017-3305089 | 73 | + | tRNA-Phe | - |
2 | NA | YP_854214.1 | 3305290-3306552 | 1263 | + | P4-like integrase | - |
3 | NA | YP_854225.1 | 3306652-3306915 | 264 | - | hypothetical protein | - |
4 | NA | YP_854230.1 | 3306992-3310519 | 3528 | + | superfamily I DNA helicase | Virulence |
5 | NA | YP_854244.1 | 3310628-3312127 | 1500 | - | hypothetical protein | Virulence |
6 | tia | YP_854245.1 | 3312302-3313057 | 756 | - | tia invasion determinant | Virulence |
7 | NA | YP_854246.1 | 3313158-3313907 | 750 | - | ISEc12 ATP-binding protein | - |
8 | NA | YP_854247.1 | 3313919-3315460 | 1542 | - | transposase for ISEc12 | - |
9 | papG | YP_854248.1 | 3315994-3317004 | 1011 | - | protein PapG | Virulence |
10 | papF | YP_854249.1 | 3317048-3317578 | 531 | - | P pilus minor tip component PapF | Virulence |
11 | papE | YP_854250.1 | 3317623-3318144 | 522 | - | PapE protein | Virulence |
12 | papK | YP_854251.1 | 3318171-3318707 | 537 | - | pilus assembly protein PapK | Virulence |
13 | papJ | YP_854252.1 | 3318717-3319298 | 582 | - | PapJ protein | Virulence |
14 | papD | YP_854253.1 | 3319335-3320069 | 735 | - | pilus assembly protein chaperone PapD | Virulence |
15 | papC | YP_854254.1 | 3320140-3322659 | 2520 | - | outer membrane usher protein PapC | Virulence |
16 | papH | YP_854255.1 | 3322709-3323296 | 588 | - | minor pilin subunit PapH | Virulence |
17 | papA | YP_854256.1 | 3323359-3323928 | 570 | - | major fibrial protein | Virulence |
18 | NA | YP_854257.1 | 3324114-3324428 | 315 | - | PapB-like protein | Virulence |
19 | papI | YP_854258.1 | 3324732-3325037 | 306 | - | fimbrial regulatory protein | Virulence |
20 | NA | YP_854259.1 | 3325337-3325663 | 327 | + | hypothetical protein | - |
21 | NA | YP_854260.1 | 3325741-3326316 | 576 | - | hypothetical protein | Virulence |
22 | NA | YP_854261.1 | 3326574-3327140 | 567 | - | hypothetical protein | Virulence |
23 | insC | YP_854262.1 | 3327566-3327856 | 291 | + | IS2 transposase | - |
24 | insD | YP_854263.1 | 3327814-3328527 | 714 | + | IS2 transposase | - |
25 | NA | YP_854264.1 | 3328729-3329094 | 366 | - | hypothetical protein | - |
26 | pgtP | YP_854265.1 | 3329137-3330501 | 1365 | - | phosphoglycerate transporter protein PgtP | - |
27 | pgtC | YP_854266.1 | 3330846-3332117 | 1272 | + | phosphoglycerate transport regulatory protein | - |
28 | pgtB | YP_854267.1 | 3332114-3334123 | 2010 | + | regulatory protein | - |
29 | pgtA | YP_854268.1 | 3334104-3335360 | 1257 | + | phosphoglycerate activator protein | - |
30 | NA | YP_854270.1 | 3335953-3336258 | 306 | - | hypothetical protein | - |
31 | NA | YP_854272.1 | 3336341-3336985 | 645 | - | hypothetical protein | - |
32 | NA | YP_854275.1 | 3337006-3337275 | 270 | - | hypothetical protein | - |
33 | NA | YP_854305.1 | 3337436-3337999 | 564 | - | hypothetical protein | Virulence |
34 | NA | YP_854308.1 | 3337984-3339216 | 1233 | - | hypothetical protein | Virulence |
35 | NA | YP_854310.1 | 3339352-3339996 | 645 | - | hypothetical protein | - |
36 | NA | YP_854311.1 | 3340190-3341638 | 1449 | - | hypothetical protein | - |
37 | NA | YP_854312.1 | 3341809-3342696 | 888 | - | transposase for IS629 | - |
38 | NA | YP_854313.1 | 3342696-3343022 | 327 | - | transposase; OrfA protein of insertion sequence IS629 | - |
39 | ireA | YP_854314.1 | 3344416-3346464 | 2049 | - | iron-regulated outer membrane virulence protein | Virulence |
40 | NA | YP_854315.1 | 3347238-3347978 | 741 | - | hypothetical protein | Virulence |
41 | NA | YP_854316.1 | 3349670-3350458 | 789 | + | hypothetical protein | - |
42 | NA | YP_854317.1 | 3350455-3351405 | 951 | - | hypothetical protein | - |
43 | NA | YP_854318.1 | 3351511-3352395 | 885 | + | hypothetical protein | Virulence |
44 | NA | YP_854319.1 | 3352598-3353278 | 681 | + | transcriptional regulator | Virulence |
45 | NA | YP_854320.1 | 3353321-3354103 | 783 | + | hypothetical protein | Virulence |
46 | yafZ | YP_854321.1 | 3354432-3355250 | 819 | + | hypothetical protein | Virulence |
47 | yfjX | YP_854322.1 | 3355341-3355826 | 486 | + | hypothetical protein | Virulence |
48 | yeeS | YP_854323.1 | 3355841-3356317 | 477 | + | radC-like protein YeeS | Virulence |
49 | yeeU | YP_854324.1 | 3356626-3357063 | 438 | + | hypothetical protein | Virulence |
50 | yeeV | YP_854325.1 | 3357110-3357487 | 378 | + | hypothetical protein | Virulence |
51 | NA | YP_854326.1 | 3357484-3357972 | 489 | + | hypothetical protein | Virulence |
52 | NA | YP_854327.1 | 3358266-3359111 | 846 | + | hypothetical protein | Virulence |
53 | NA | YP_854328.1 | 3359182-3360717 | 1536 | + | hypothetical protein | - |
54 | kpsF | YP_854329.1 | 3362058-3363077 | 1020 | + | polysialic acid capsule synthesis protein KpsF | Virulence |
55 | kpsE | YP_854330.1 | 3363149-3364297 | 1149 | + | polysialic acid transport protein KpsE | Virulence |
56 | kpsD | YP_854331.1 | 3364321-3365997 | 1677 | + | polysialic acid transport protein KpsD precursor | Virulence |
57 | kpsU | YP_854332.1 | 3366007-3366747 | 741 | + | 3-deoxy-manno-octulosonate cytidylyltransferase | Virulence |
58 | kpsC | YP_854335.1 | 3366744-3368771 | 2028 | + | capsule polysaccharide export protein KpsC | Virulence |
59 | kpsS | YP_854344.1 | 3368806-3370011 | 1206 | + | polysialic acid capsule synthesis protein KpsS | Virulence |
60 | neuS | YP_854390.1 | 3370161-3371390 | 1230 | - | poly-alpha-2,8 sialosyl sialyltransferase NeuS | - |
61 | neuE | YP_854391.1 | 3371380-3372555 | 1176 | - | polysialic acid biosynthesis protein NeuE | - |
62 | neuC | YP_854392.1 | 3372521-3373696 | 1176 | - | polysialic acid biosynthesis protein | Virulence |
63 | neuA | YP_854393.1 | 3373693-3374949 | 1257 | - | acylneuraminate cytidylyltransferase | - |
64 | neuB | YP_854394.1 | 3374949-3375989 | 1041 | - | sialic acid synthase | Virulence |
65 | neuD | YP_854395.1 | 3375986-3376609 | 624 | - | sialic acid synthase | - |
66 | kpsT | YP_854396.1 | 3376659-3377318 | 660 | - | polysialic acid transport ATP-binding protein KpsT | Virulence |
67 | kpsM | YP_854397.1 | 3377315-3378091 | 777 | - | polysialic acid transport protein KpsM | Virulence |
68 | gspM | YP_854398.1 | 3379149-3379685 | 537 | - | general secretion pathway protein YghD | Virulence |
69 | gspL | YP_854399.2 | 3379687-3380547 | 861 | - | GspL-like protein | Virulence |
70 | gspK | YP_854400.1 | 3380862-3381839 | 978 | - | type II secretion protein GspK | Virulence |
71 | gspJ | YP_854401.1 | 3381836-3382441 | 606 | - | type II secretion protein GspJ | Virulence |
72 | gspI | YP_854402.1 | 3382438-3382809 | 372 | - | type II secretion protein GspI | Virulence |
73 | gspH | YP_854403.1 | 3382806-3383369 | 564 | - | type II secretion protein GspH | Virulence |
74 | gspG | YP_854404.1 | 3383373-3383828 | 456 | - | type II secretion protein GspG | Virulence |
75 | gspF | YP_854405.1 | 3383845-3385068 | 1224 | - | type II secretion protein GspF | Virulence |
76 | gspE | YP_854406.1 | 3385068-3386561 | 1494 | - | type II secretion protein GspE | Virulence |
77 | gspD | YP_854407.1 | 3386561-3388621 | 2061 | - | type II secretion protein GspD | Virulence |
78 | gspC | YP_854408.1 | 3388651-3389493 | 843 | - | type II secretion protein GspC | Virulence |
79 | NA | YP_854410.1 | 3389628-3390038 | 411 | - | hypothetical protein | - |
80 | pppA | YP_854416.1 | 3390104-3391009 | 906 | - | prepilin peptidase A | - |
81 | yghJ | YP_854419.1 | 3391077-3395639 | 4563 | - | lipoprotein AcfD-like | Virulence |
82 | NA | YP_854446.1 | 3395790-3396095 | 306 | + | hypothetical protein | - |
83 | yghK | YP_854447.1 | 3396123-3397805 | 1683 | - | glycolate transporter | - |
84 | glcB | YP_854448.1 | 3398161-3400332 | 2172 | - | malate synthase G | - |
85 | glcC | YP_854449.1 | 3400354-3400758 | 405 | - | hypothetical protein | - |
86 | glcE | YP_854450.1 | 3401997-3403049 | 1053 | - | glycolate oxidase FAD binding subunit | - |
87 | glcD | YP_854451.1 | 3403049-3404548 | 1500 | - | glycolate oxidase subunit GlcD | - |
88 | glcC | YP_854452.1 | 3404739-3405563 | 825 | + | DNA-binding transcriptional regulator GlcC | - |
89 | NA | YP_854453.1 | 3405570-3406712 | 1143 | - | hypothetical protein | - |
90 | NA | YP_854454.1 | 3407083-3408807 | 1725 | + | acyl-CoA synthetase | - |
91 | NA | YP_854455.1 | 3408594-3409718 | 1125 | + | hypothetical protein | - |
92 | NA | YP_854456.1 | 3409998-3411170 | 1173 | + | hypothetical protein | - |
93 | NA | YP_854457.1 | 3411205-3412284 | 1080 | - | permease | - |
94 | NA | YP_854458.1 | 3412281-3413351 | 1071 | - | permease | - |
95 | ytfJ | YP_854459.1 | 3413382-3413942 | 561 | - | transcriptional regulator | - |
96 | NA | YP_854460.1 | 3413942-3414778 | 837 | - | hypothetical protein | - |