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Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Clavibacter michiganensis NCPPB 382 (NC_009480) Location : 40054 - 168797 bp Size : 128744 bp GC content : 65.8 % GC bias (=GCregion - GCgenome) : -6.89 % |
No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
1 | NA | YP_001220773.1 | 40054-40860 | 807 | + | putative sugar phosphate isomerase/epimerase | - |
2 | NA | YP_001220774.1 | 40857-41966 | 1110 | + | putative dehydrogenase/oxidoreductase | - |
3 | NA | YP_001220775.1 | 42124-43209 | 1086 | + | LacI family transcriptional regulator | - |
4 | NA | - | 43461-44466 | 1006 | + | - | - |
5 | NA | - | 44770-45300 | 531 | + | - | - |
6 | NA | YP_001220776.1 | 45327-45899 | 573 | - | hypothetical protein | - |
7 | NA | - | 46243-46467 | 225 | - | - | - |
8 | chpD | - | 46723-47512 | 790 | + | - | - |
9 | NA | YP_001220777.1 | 47879-48292 | 414 | - | hypothetical protein | - |
10 | chpE | YP_001220778.1 | 48734-49567 | 834 | - | serine protease | - |
11 | NA | YP_001220779.1 | 49775-50104 | 330 | - | hypothetical protein | - |
12 | ppaA | YP_001220780.1 | 50376-51356 | 981 | + | putative extracellular serine protease | - |
13 | ppaB1 | YP_001220781.1 | 51503-52507 | 1005 | - | putative extracellular serine protease | - |
14 | pelA1 | YP_001220782.1 | 52708-53559 | 852 | + | hypothetical protein | - |
15 | ppaC | YP_001220783.1 | 53883-54896 | 1014 | - | putative extracellular serine protease | - |
16 | NA | YP_001220784.1 | 57043-57396 | 354 | - | hypothetical protein | - |
17 | chpA | - | 58928-59730 | 803 | + | - | - |
18 | NA | YP_001220785.1 | 61909-62718 | 810 | + | hypothetical protein | - |
19 | NA | YP_001220786.1 | 63422-63748 | 327 | - | hypothetical protein | - |
20 | NA | YP_001220787.1 | 64558-64995 | 438 | - | hypothetical protein | - |
21 | NA | - | 65242-65418 | 177 | - | - | - |
22 | nagA | YP_001220788.1 | 65645-67468 | 1824 | + | putative beta-N-acetylglucosaminidase | - |
23 | ppaB2 | YP_001220789.1 | 67885-68886 | 1002 | - | putative extracellular protease | - |
24 | pelA2 | YP_001220790.1 | 69085-69936 | 852 | + | hypothetical protein | - |
25 | chpC | YP_001220791.1 | 70785-71645 | 861 | - | serine protease | Virulence |
26 | NA | - | 72304-72916 | 613 | + | - | - |
27 | chpF | YP_001220792.1 | 74779-75633 | 855 | + | serine protease | Virulence |
28 | NA | YP_001220793.1 | 76541-77545 | 1005 | - | hypothetical protein | - |
29 | NA | YP_001220794.1 | 77538-78542 | 1005 | - | hypothetical protein | - |
30 | NA | YP_001220795.1 | 79094-79756 | 663 | - | hypothetical protein | - |
31 | NA | YP_001220796.1 | 80653-80916 | 264 | - | hypothetical protein | - |
32 | NA | YP_001220797.1 | 82453-82716 | 264 | + | hypothetical protein | - |
33 | chpG | YP_001220798.1 | 82939-83772 | 834 | + | putative extracellular serine protease | Virulence |
34 | NA | YP_001220799.1 | 85126-85584 | 459 | + | hypothetical protein | - |
35 | NA | YP_001220800.1 | 85938-86894 | 957 | + | putative cell filamentation protein | - |
36 | parB2 | - | 87336-88883 | 1548 | + | - | - |
37 | chpB | - | 88997-89862 | 866 | - | - | - |
38 | NA | YP_001220801.1 | 91403-91792 | 390 | + | hypothetical protein | - |
39 | NA | YP_001220802.1 | 92168-92875 | 708 | + | hypothetical protein | - |
40 | NA | YP_001220803.1 | 92944-93639 | 696 | - | putative hydrolase | - |
41 | NA | YP_001220804.1 | 93727-94533 | 807 | - | putative phosphotransferase | - |
42 | parX | YP_001220805.1 | 94677-95309 | 633 | + | partitioning protein | - |
43 | NA | YP_001220806.1 | 96096-97265 | 1170 | + | putative ATPase | - |
44 | NA | YP_001220807.1 | 97383-97616 | 234 | + | hypothetical protein | - |
45 | nhaA1 | YP_001220808.1 | 97673-98977 | 1305 | - | NahA family Na(+)/H(+) antiporter | - |
46 | sbtA | YP_001220809.1 | 99640-102741 | 3102 | - | subtilisin-like serine protease | - |
47 | NA | - | 103059-103187 | 129 | - | - | - |
48 | ppaE | YP_001220810.1 | 103428-104384 | 957 | - | hypothetical protein | - |
49 | NA | - | 104495-105838 | 1344 | - | - | - |
50 | NA | YP_001220811.1 | 106123-106863 | 741 | - | hypothetical protein | - |
51 | NA | YP_001220812.1 | 107334-108860 | 1527 | + | putative acyl-CoA synthetase (AMP-forming) | - |
52 | NA | YP_001220813.1 | 112168-112389 | 222 | + | hypothetical protein | - |
53 | ppaD | YP_001220814.1 | 113031-114005 | 975 | - | putative extracellular serine protease | - |
54 | NA | YP_001220815.1 | 114879-115307 | 429 | + | hypothetical protein | - |
55 | NA | YP_001220816.1 | 116970-117137 | 168 | - | hypothetical protein | - |
56 | NA | YP_001220817.1 | 117213-118871 | 1659 | + | putative NADH oxidase | - |
57 | NA | YP_001220818.1 | 118888-119187 | 300 | + | hypothetical protein | - |
58 | NA | YP_001220819.1 | 119184-119501 | 318 | + | hypothetical protein | - |
59 | NA | YP_001220820.1 | 119736-120527 | 792 | - | putative short-chain dehydrogenase/reductase | - |
60 | bglB | YP_001220821.1 | 120538-122925 | 2388 | - | putative beta-glucosidase | - |
61 | bglC | YP_001220822.1 | 123070-124908 | 1839 | - | putative beta-glucosidase/beta-xylosidase | - |
62 | NA | YP_001220823.1 | 124978-125889 | 912 | - | putative sugar ABC transporter permease | - |
63 | NA | YP_001220824.1 | 125886-126968 | 1083 | - | putative sugar ABC transporter permease | - |
64 | NA | YP_001220825.1 | 127043-128320 | 1278 | - | putative sugar ABC transporter binding protein | - |
65 | NA | YP_001220826.1 | 128542-129288 | 747 | + | TetR family transcriptional regulator | - |
66 | bglA | YP_001220827.1 | 129377-130822 | 1446 | - | putative beta-glucosidase | - |
67 | catR | YP_001220828.1 | 131048-132076 | 1029 | + | LacI family transcriptional regulator | - |
68 | tomA | YP_001220829.1 | 132170-133801 | 1632 | - | tomatinase, endo-1,4-beta-glycosidase | Virulence |
69 | regB | YP_001220830.1 | 134140-134811 | 672 | - | putative two-component system response regulator | - |
70 | regA | YP_001220831.1 | 134808-135962 | 1155 | - | putative two-component system sensor kinase | - |
71 | NA | YP_001220832.1 | 135959-138130 | 2172 | - | RND family transporter | - |
72 | cytA | YP_001220833.1 | 138337-139557 | 1221 | + | cytochrome P450 | - |
73 | cytB | YP_001220834.1 | 139554-139751 | 198 | + | putative 3Fe-4S ferredoxin | - |
74 | cytC | YP_001220835.1 | 139748-140950 | 1203 | + | putative ferredoxin reductase | - |
75 | bglD | YP_001220836.1 | 141009-143633 | 2625 | - | glycosyl hydrolase family beta-glucosidase | - |
76 | NA | YP_001220837.1 | 143748-144755 | 1008 | - | LacI family transcriptional regulator | - |
77 | bglE | YP_001220838.1 | 144980-147469 | 2490 | + | hypothetical protein | - |
78 | bglF | YP_001220839.1 | 147484-149739 | 2256 | + | beta-galactosidase | - |
79 | bglG | YP_001220840.1 | 149904-151076 | 1173 | + | beta-galactosidase | - |
80 | bglH | YP_001220841.1 | 151096-152694 | 1599 | + | putative beta-galactosidase | - |
81 | bglI | YP_001220842.1 | 152728-154494 | 1767 | - | beta-xylosidase glycosyl hydrolase family 43 | - |
82 | NA | YP_001220843.1 | 154629-156008 | 1380 | + | sugar permease | - |
83 | ramA | YP_001220844.1 | 156005-158506 | 2502 | + | putative alpha-rhamnosidase | - |
84 | aglA | YP_001220845.1 | 159396-161624 | 2229 | - | alpha-xylosidase | - |
85 | NA | YP_001220846.1 | 161748-162659 | 912 | - | putative sugar ABC transporter permease compound | - |
86 | NA | YP_001220847.1 | 162659-163621 | 963 | - | putative sugar ABC transporter permease | - |
87 | NA | YP_001220848.1 | 163695-165053 | 1359 | - | putative sugar ABC transporter binding protein | - |
88 | NA | YP_001220849.1 | 165201-166802 | 1602 | + | xylosidase glycosyl hydrolase family protein | - |
89 | NA | YP_001220850.1 | 166885-167691 | 807 | + | putative sugar phosphate isomerase/epimerase | - |
90 | NA | YP_001220851.1 | 167688-168797 | 1110 | + | putative dehydrogenase/oxidoreductase | - |