PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Salmonella enterica SGSC4150; SPB7 (NC_010102)
Location : 2794604 - 2809978 bp
Size : 15375 bp
GC content : 52.5 %
GC bias (=GCregion - GCgenome) : 0.34 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA YP_001589526.1 2794604-2794879 276 + hypothetical proteinVirulence
2NA YP_001589527.1 2794985-2795872 888 + hypothetical protein-
3NA YP_001589528.1 2795883-2796362 480 + hypothetical proteinVirulence
4NA YP_001589529.1 2796378-2796668 291 + hypothetical protein-
5NA YP_001589530.1 2796665-2796886 222 + hypothetical proteinVirulence
6NA YP_001589531.1 2796904-2797272 369 + hypothetical protein-
7NA YP_001589532.1 2797307-2797615 309 + hypothetical proteinVirulence
8NA YP_001589533.1 2797612-2798256 645 + hypothetical protein-
9NA YP_001589534.1 2798315-2798692 378 + hypothetical proteinVirulence
10NA YP_001589535.1 2798758-2799180 423 + hypothetical proteinVirulence
11NA YP_001589536.1 2799206-2799400 195 + hypothetical proteinVirulence
12NA YP_001589537.1 2799478-2800323 846 + hypothetical proteinVirulence
13tRNA-Asp - 2800466-2800539 74 - tRNA-Asp-
14NA YP_001589539.1 2800540-2800647 108 + hypothetical protein-
15NA YP_001589540.1 2800673-2801413 741 - DNA polymerase III subunit epsilon-
16rnhA YP_001589541.1 2801468-2801935 468 + ribonuclease H-
17NA YP_001589542.1 2801932-2802654 723 - hypothetical protein-
18NA YP_001589543.1 2802689-2803444 756 + hydroxyacylglutathione hydrolase-
19mltD YP_001589544.1 2803663-2804883 1221 + membrane-bound lytic murein transglycosylase D-
20NA YP_001589545.1 2804939-2805709 771 - hypothetical protein-
21NA YP_001589546.1 2805787-2806446 660 - hypothetical protein-
22NA YP_001589547.1 2806466-2806600 135 - hypothetical protein-
23NA YP_001589548.1 2806719-2807894 1176 - hypothetical protein-
24NA YP_001589549.1 2807999-2808913 915 + hypothetical protein-
25dkgB YP_001589550.1 2808934-2809737 804 - 2,5-diketo-D-gluconate reductase B-
26tRNA-Asp - 2809905-2809978 74 - tRNA-Asp-


tRNA-Asp tRNA-Asp PI: Esc.18aec70 aec73 aec74 aec75 aec76 aec77 aec79 PI: Esc.13.NC_013353_P1ECO103_3589 ECO103_3590 ECO103_3591 ECO103_3592 ECO103_3593 ECO103_3594 ECO103_3595 PI: Esc.13.4- - - - PI: Esc.13.5- yeeS yeeS - - - - yeeW - - PI: Esc.1- z1217 yeeT z5091 z5092 z1225 z1226 PI: Esc.12.NC_008563_P4yeeS yeeV APECO1_3485 APECO1_3484 PI: Esc.12ORF_46 yeeS yeeT yeeV yeeW ORF_49 PI: Esc.2- yeeT yeeU - - - PI: Esc.7.NC_004431_P2c5157 c5152 c5151 c5149 c5148 c5147 PI: Esc.7- - - - - PI: Esc.3- - - - - - - PI: Esc.5ykfF yeeS yeeT yeeV yeeW - - PI: Esc.8.1ykfF yeeS yeeT yeeU yeeV yeeW - PI: Shi.1.NC_004741_P1yeeS yeeT yeeU yeeV yeeW S3207 PI: Shi.1.NC_004337_P1yeeS yeeT yeeU yeeV yeeW SF3001 SF3002 PI: Shi.1.1- - - - - - - PI: Shi.5- - - - - - PI: Esc.24.NC_002655_P2Z1657 Z1658 Z1662 Z1663 Z1664 PI: Esc.24.NC_002655_P1Z1217 Z1218 Z1220 Z1223 Z1225 Z1226 PI: Pho.1-dnaQ rnhA orf71 gloB mltD -

• PAIs homologous to this region

PAI I 536 (Escherichia coli 536)
PAI I APEC-O1 (Escherichia coli APEC O1)
PAI I APEC-O1 (Escherichia coli APEC O1)
LEE (Escherichia coli 84/110-1)
LEE (Escherichia coli RW1374)
LEE (Escherichia coli 12009)
AGI-3 (Escherichia coli BEN2908)
PAI II 536 (Escherichia coli 536)
TAI (Escherichia coli O157:H7 EDL933)
TAI (Escherichia coli O157:H7 EDL933)
PAI III 536 (Escherichia coli 536)
PAI V 536 (Escherichia coli 536)
PAI II CFT073 (Escherichia coli CFT073)
PAI II CFT073 (Escherichia coli CFT073)
PAI-I AL862 (Escherichia coli AL862)
tcd island (Photorhabdus luminescens W14)
SHI-1 (Shigella flexneri YSH6000T)
SHI-1 (Shigella flexneri 2a str. 301)
SHI-1 (Shigella flexneri 2a str. 2457T)
SRL (Shigella flexneri YSH6000)