PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli EC4115 (NC_011353)
Location : 4683873 - 4728609 bp
Size : 44737 bp
GC content : 41.1 %
GC bias (=GCregion - GCgenome) : -9.37 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Sec - 4683873-4683967 95 + tRNA-Sec-
2NA YP_002273139.1 4684091-4685344 1254 + integrase-
3NA YP_002273140.1 4685479-4685793 315 + IS911 transposase orfA-
4NA YP_002273141.1 4685913-4686659 747 + IS911 transposase orfB-
5NA YP_002273142.1 4686677-4686820 144 + Aec75-
6NA YP_002273143.1 4686910-4687284 375 + hypothetical proteinVirulence
7NA YP_002273144.1 4687281-4687772 492 + hypothetical proteinVirulence
8NA - 4687784-4687981 198 + --
9NA - 4688066-4688407 342 + --
10NA - 4688680-4688793 114 + --
11NA YP_002273145.1 4689403-4689564 162 + IS66 family element, orf1-
12NA YP_002273146.1 4689561-4689908 348 + IS66 family element, orf2-
13NA YP_002273147.1 4689958-4691496 1539 + IS66 family element, transposase-
14NA YP_002273148.1 4691936-4692055 120 - hypothetical protein-
15NA YP_002273149.1 4692361-4692798 438 - protein EspF-
16NA YP_002273150.1 4692821-4692973 153 + hypothetical protein-
17eprI YP_002273151.1 4693476-4693697 222 - type III secretion apparatus needle proteinVirulence
18NA YP_002273152.1 4693733-4694140 408 - hypothetical proteinVirulence
19NA YP_002273153.1 4694147-4694941 795 - protein EspBVirulence
20NA YP_002273154.1 4695106-4696230 1125 - protein EspDVirulence
21NA YP_002273155.1 4696243-4696680 438 - protein EspAVirulence
22NA YP_002273156.1 4696880-4697935 1056 - protein SepLVirulence
23NA YP_002273157.1 4698078-4699298 1221 + type III secretion apparatus protein, YscD/HrpQ familyVirulence
24NA YP_002273158.1 4699562-4702366 2805 - intimin C-type lectin domain-containing proteinVirulence
25NA YP_002273159.1 4702426-4702896 471 - Tir chaperoneVirulence
26NA YP_002273160.1 4703034-4704710 1677 - TirVirulence
27NA YP_002273161.1 4705134-4705619 486 - Map proteinVirulence
28NA YP_002273162.1 4706011-4706394 384 + hypothetical proteinVirulence
29NA YP_002273163.1 4706592-4707098 507 - hypothetical proteinVirulence
30NA YP_002273164.1 4707129-4708046 918 - protein SepQVirulence
31NA YP_002273165.1 4708418-4708738 321 - ST25 proteinVirulence
32NA YP_002273166.1 4708798-4710138 1341 - type III secretion apparatus H+-transporting two-sector ATPaseVirulence
33NA YP_002273167.1 4710122-4712149 2028 - type III secretion protein, HrcV familyVirulence
34NA YP_002273168.1 4712146-4712499 354 - ST22 proteinVirulence
35NA YP_002273169.1 4712662-4712805 144 - hypothetical protein-
36NA YP_002273170.1 4713447-4714019 573 + type III secretion apparatus lipoprotein, YscJ/HrcJ familyVirulence
37NA YP_002273171.1 4714175-4714336 162 - hypothetical protein-
38NA YP_002273172.1 4714361-4714480 120 + protein SepD-
39NA YP_002273173.1 4714480-4716018 1539 + type III secretion outer membrane pore, YscC/HrcC familyVirulence
40NA YP_002273174.1 4717339-4717710 372 - negative regulator GrlRVirulence
41NA YP_002273175.1 4717906-4718364 459 + transglycosylase SLT domain-containing proteinVirulence
42NA YP_002273176.1 4718361-4719398 1038 - secretion system apparatus protein SsaUVirulence
43epaR YP_002273177.1 4719391-4720167 777 - type III secretion apparatus protein SpaR/YscT/HrcTVirulence
44NA YP_002273178.1 4720167-4720292 126 - EscS protein-
45epaP YP_002273179.1 4720436-4721089 654 - type III secretion system proteinVirulence
46NA YP_002273180.1 4721094-4721747 654 - hypothetical proteinVirulence
47NA YP_002273181.1 4721734-4721877 144 - hypothetical protein-
48NA YP_002273182.1 4722330-4722644 315 - hypothetical proteinVirulence
49NA YP_002273183.1 4722657-4722875 219 - type III secretion system protein, YseE familyVirulence
50NA YP_002273184.1 4722890-4723261 372 - hypothetical proteinVirulence
51NA YP_002273185.1 4724575-4725720 1146 + protein EspGVirulence
52NA YP_002273186.1 4725848-4726666 819 + sdiA-regulated domain-containing proteinVirulence
53NA YP_002273187.1 4727060-4727173 114 - hypothetical protein-
54NA YP_002273188.1 4727438-4727623 186 - hypothetical protein-
55NA YP_002273189.1 4727686-4728609 924 + carboxylate/amino acid/amine transporter-


tRNA-Sec