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Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Escherichia coli EC4115 (NC_011353) Location : 4683873 - 4728609 bp Size : 44737 bp GC content : 41.1 % GC bias (=GCregion - GCgenome) : -9.37 % |
No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
1 | tRNA-Sec | - | 4683873-4683967 | 95 | + | tRNA-Sec | - |
2 | NA | YP_002273139.1 | 4684091-4685344 | 1254 | + | integrase | - |
3 | NA | YP_002273140.1 | 4685479-4685793 | 315 | + | IS911 transposase orfA | - |
4 | NA | YP_002273141.1 | 4685913-4686659 | 747 | + | IS911 transposase orfB | - |
5 | NA | YP_002273142.1 | 4686677-4686820 | 144 | + | Aec75 | - |
6 | NA | YP_002273143.1 | 4686910-4687284 | 375 | + | hypothetical protein | Virulence |
7 | NA | YP_002273144.1 | 4687281-4687772 | 492 | + | hypothetical protein | Virulence |
8 | NA | - | 4687784-4687981 | 198 | + | - | - |
9 | NA | - | 4688066-4688407 | 342 | + | - | - |
10 | NA | - | 4688680-4688793 | 114 | + | - | - |
11 | NA | YP_002273145.1 | 4689403-4689564 | 162 | + | IS66 family element, orf1 | - |
12 | NA | YP_002273146.1 | 4689561-4689908 | 348 | + | IS66 family element, orf2 | - |
13 | NA | YP_002273147.1 | 4689958-4691496 | 1539 | + | IS66 family element, transposase | - |
14 | NA | YP_002273148.1 | 4691936-4692055 | 120 | - | hypothetical protein | - |
15 | NA | YP_002273149.1 | 4692361-4692798 | 438 | - | protein EspF | - |
16 | NA | YP_002273150.1 | 4692821-4692973 | 153 | + | hypothetical protein | - |
17 | eprI | YP_002273151.1 | 4693476-4693697 | 222 | - | type III secretion apparatus needle protein | Virulence |
18 | NA | YP_002273152.1 | 4693733-4694140 | 408 | - | hypothetical protein | Virulence |
19 | NA | YP_002273153.1 | 4694147-4694941 | 795 | - | protein EspB | Virulence |
20 | NA | YP_002273154.1 | 4695106-4696230 | 1125 | - | protein EspD | Virulence |
21 | NA | YP_002273155.1 | 4696243-4696680 | 438 | - | protein EspA | Virulence |
22 | NA | YP_002273156.1 | 4696880-4697935 | 1056 | - | protein SepL | Virulence |
23 | NA | YP_002273157.1 | 4698078-4699298 | 1221 | + | type III secretion apparatus protein, YscD/HrpQ family | Virulence |
24 | NA | YP_002273158.1 | 4699562-4702366 | 2805 | - | intimin C-type lectin domain-containing protein | Virulence |
25 | NA | YP_002273159.1 | 4702426-4702896 | 471 | - | Tir chaperone | Virulence |
26 | NA | YP_002273160.1 | 4703034-4704710 | 1677 | - | Tir | Virulence |
27 | NA | YP_002273161.1 | 4705134-4705619 | 486 | - | Map protein | Virulence |
28 | NA | YP_002273162.1 | 4706011-4706394 | 384 | + | hypothetical protein | Virulence |
29 | NA | YP_002273163.1 | 4706592-4707098 | 507 | - | hypothetical protein | Virulence |
30 | NA | YP_002273164.1 | 4707129-4708046 | 918 | - | protein SepQ | Virulence |
31 | NA | YP_002273165.1 | 4708418-4708738 | 321 | - | ST25 protein | Virulence |
32 | NA | YP_002273166.1 | 4708798-4710138 | 1341 | - | type III secretion apparatus H+-transporting two-sector ATPase | Virulence |
33 | NA | YP_002273167.1 | 4710122-4712149 | 2028 | - | type III secretion protein, HrcV family | Virulence |
34 | NA | YP_002273168.1 | 4712146-4712499 | 354 | - | ST22 protein | Virulence |
35 | NA | YP_002273169.1 | 4712662-4712805 | 144 | - | hypothetical protein | - |
36 | NA | YP_002273170.1 | 4713447-4714019 | 573 | + | type III secretion apparatus lipoprotein, YscJ/HrcJ family | Virulence |
37 | NA | YP_002273171.1 | 4714175-4714336 | 162 | - | hypothetical protein | - |
38 | NA | YP_002273172.1 | 4714361-4714480 | 120 | + | protein SepD | - |
39 | NA | YP_002273173.1 | 4714480-4716018 | 1539 | + | type III secretion outer membrane pore, YscC/HrcC family | Virulence |
40 | NA | YP_002273174.1 | 4717339-4717710 | 372 | - | negative regulator GrlR | Virulence |
41 | NA | YP_002273175.1 | 4717906-4718364 | 459 | + | transglycosylase SLT domain-containing protein | Virulence |
42 | NA | YP_002273176.1 | 4718361-4719398 | 1038 | - | secretion system apparatus protein SsaU | Virulence |
43 | epaR | YP_002273177.1 | 4719391-4720167 | 777 | - | type III secretion apparatus protein SpaR/YscT/HrcT | Virulence |
44 | NA | YP_002273178.1 | 4720167-4720292 | 126 | - | EscS protein | - |
45 | epaP | YP_002273179.1 | 4720436-4721089 | 654 | - | type III secretion system protein | Virulence |
46 | NA | YP_002273180.1 | 4721094-4721747 | 654 | - | hypothetical protein | Virulence |
47 | NA | YP_002273181.1 | 4721734-4721877 | 144 | - | hypothetical protein | - |
48 | NA | YP_002273182.1 | 4722330-4722644 | 315 | - | hypothetical protein | Virulence |
49 | NA | YP_002273183.1 | 4722657-4722875 | 219 | - | type III secretion system protein, YseE family | Virulence |
50 | NA | YP_002273184.1 | 4722890-4723261 | 372 | - | hypothetical protein | Virulence |
51 | NA | YP_002273185.1 | 4724575-4725720 | 1146 | + | protein EspG | Virulence |
52 | NA | YP_002273186.1 | 4725848-4726666 | 819 | + | sdiA-regulated domain-containing protein | Virulence |
53 | NA | YP_002273187.1 | 4727060-4727173 | 114 | - | hypothetical protein | - |
54 | NA | YP_002273188.1 | 4727438-4727623 | 186 | - | hypothetical protein | - |
55 | NA | YP_002273189.1 | 4727686-4728609 | 924 | + | carboxylate/amino acid/amine transporter | - |