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Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Escherichia coli S88 (NC_011742) Location : 3219801 - 3329570 bp Size : 109770 bp GC content : 47.6 % GC bias (=GCregion - GCgenome) : -3.05 % |
No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
1 | tRNA-Phe | - | 3219801-3219876 | 76 | + | tRNA-Phe | - |
2 | int | YP_002392871.1 | 3220074-3221336 | 1263 | + | Prophage integrase | - |
3 | NA | YP_002392872.1 | 3221776-3225303 | 3528 | + | superfamily I DNA helicase | Virulence |
4 | NA | - | 3225412-3226329 | 918 | - | - | - |
5 | NA | YP_002392873.1 | 3226497-3228038 | 1542 | + | transposase for ISEc12, catalytic region (orf1) | - |
6 | NA | YP_002392874.1 | 3228050-3228799 | 750 | + | transposase iISEc12, ATP-binding protein (orf2) | - |
7 | NA | - | 3228853-3229497 | 645 | - | - | - |
8 | tia | YP_002392875.1 | 3229672-3230427 | 756 | - | Tia invasion determinant | Virulence |
9 | papG | YP_002392876.1 | 3230778-3231788 | 1011 | - | Fimbrial PapG protein (P pilus class II adhesin) (PapGII) | Virulence |
10 | papF | YP_002392877.1 | 3231832-3232362 | 531 | - | Fimbrial adapter PapF precursor | Virulence |
11 | papE | YP_002392878.1 | 3232407-3232946 | 540 | - | Fimbrial tip protein PapE | Virulence |
12 | papK | YP_002392879.1 | 3232955-3233494 | 540 | - | Fimbrial adapter PapK precursor | Virulence |
13 | papJ | YP_002392880.1 | 3233501-3234082 | 582 | - | Protein PapJ precursor, P pilus assembly | Virulence |
14 | papD | YP_002392881.1 | 3234119-3234853 | 735 | - | Chaperone protein PapD precursor | Virulence |
15 | papC | YP_002392882.1 | 3234924-3237455 | 2532 | - | Outer membrane usher protein PapC precursor | Virulence |
16 | papH | YP_002392883.1 | 3237493-3238080 | 588 | - | minor pilin protein PapH | Virulence |
17 | papA | YP_002392884.1 | 3238143-3238724 | 582 | - | major pilin protein PapA | Virulence |
18 | papB | YP_002392885.1 | 3238898-3239212 | 315 | - | pap operon regulatory protein PapB | Virulence |
19 | papI | YP_002392886.1 | 3239644-3239877 | 234 | + | pap operon regulatory protein PapI | Virulence |
20 | NA | YP_002392887.1 | 3240072-3240335 | 264 | - | hypothetical protein | - |
21 | NA | YP_002392888.1 | 3240220-3240456 | 237 | - | hypothetical protein | Virulence |
22 | NA | YP_002392889.1 | 3240525-3241130 | 606 | - | hypothetical protein | Virulence |
23 | NA | YP_002392890.1 | 3241358-3241924 | 567 | - | hypothetical protein | Virulence |
24 | NA | YP_002392891.1 | 3242019-3242174 | 156 | + | hypothetical protein | - |
25 | NA | - | 3242211-3242417 | 207 | + | - | - |
26 | NA | - | 3242350-3242640 | 291 | + | - | - |
27 | insD | - | 3242598-3243311 | 714 | + | - | - |
28 | insD | - | 3243308-3243478 | 171 | + | - | - |
29 | pgtP | YP_002392892.1 | 3243921-3245285 | 1365 | - | Phosphoglycerate transporter protein | - |
30 | pgtC | YP_002392893.1 | 3245594-3246901 | 1308 | + | Phosphoglycerate transport regulatory protein | - |
31 | pgtB | YP_002392894.1 | 3246898-3248907 | 2010 | + | Phosphoglycerate transport system sensor protein | - |
32 | pgtA | YP_002392895.1 | 3248888-3250144 | 1257 | + | Phosphoglycerate transport system transcriptional regulatory protein | - |
33 | NA | YP_002392896.1 | 3250353-3250628 | 276 | + | hypothetical protein | - |
34 | NA | YP_002392897.1 | 3250685-3250834 | 150 | + | hypothetical protein | - |
35 | NA | YP_002392898.1 | 3250737-3251060 | 324 | - | hypothetical protein | - |
36 | NA | YP_002392899.1 | 3251125-3251769 | 645 | - | hypothetical protein | - |
37 | NA | YP_002392900.1 | 3251790-3252098 | 309 | - | hypothetical protein | - |
38 | ibrB | - | 3252138-3252293 | 156 | - | - | - |
39 | ibrB | - | 3252220-3252783 | 564 | - | - | - |
40 | ibrA | YP_002392901.1 | 3252768-3254000 | 1233 | - | immunoglobulin-binding regulator | Virulence |
41 | NA | YP_002392902.1 | 3254136-3254789 | 654 | - | hypothetical protein | - |
42 | NA | YP_002392903.1 | 3254974-3256434 | 1461 | - | overcoming lysogenization defect protein (old-like) | - |
43 | NA | YP_002392904.1 | 3256593-3257480 | 888 | - | transposase ORF B, IS629 | - |
44 | NA | YP_002392905.1 | 3257480-3257806 | 327 | - | transposase ORF A, IS629 | - |
45 | NA | - | 3258078-3258263 | 186 | + | - | - |
46 | NA | - | 3258408-3258860 | 453 | + | - | - |
47 | ireA | YP_002392906.1 | 3259200-3261248 | 2049 | - | iron-regulated outer membrane virulence protein | Virulence |
48 | NA | YP_002392907.1 | 3261724-3261942 | 219 | - | hypothetical protein | - |
49 | NA | YP_002392908.1 | 3262030-3262770 | 741 | - | hypothetical protein | Virulence |
50 | NA | YP_002392909.1 | 3262875-3263123 | 249 | + | hypothetical protein | - |
51 | NA | YP_002392910.1 | 3263129-3263365 | 237 | - | hypothetical protein | - |
52 | NA | YP_002392911.1 | 3263635-3263778 | 144 | + | hypothetical protein | - |
53 | NA | YP_002392912.1 | 3263903-3264076 | 174 | - | hypothetical protein | - |
54 | NA | YP_002392913.1 | 3264375-3265250 | 876 | + | hypothetical protein | - |
55 | NA | YP_002392914.1 | 3265247-3266200 | 954 | - | hypothetical protein | - |
56 | NA | YP_002392915.1 | 3266303-3267187 | 885 | + | GTP-binding protein | Virulence |
57 | yfjR | YP_002392916.1 | 3267390-3268070 | 681 | + | HTH-type transcriptional regulator | Virulence |
58 | NA | YP_002392917.1 | 3268113-3268895 | 783 | + | hypothetical protein | Virulence |
59 | NA | YP_002392918.1 | 3268901-3269134 | 234 | + | hypothetical protein | Virulence |
60 | NA | YP_002392919.1 | 3269224-3270042 | 819 | + | hypothetical protein | Virulence |
61 | NA | YP_002392920.1 | 3270133-3270618 | 486 | + | antirestriction protein (klcA-like) | Virulence |
62 | yeeS | YP_002392921.1 | 3270663-3271109 | 447 | + | DNA repair protein; CP4-44 prophage | Virulence |
63 | yeeT | YP_002392922.1 | 3271178-3271399 | 222 | + | hypothetical protein | Virulence |
64 | yeeU | YP_002392923.1 | 3271478-3271855 | 378 | + | antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophage | Virulence |
65 | yeeV | YP_002392924.1 | 3271788-3272279 | 492 | + | toxin of the YeeV-YeeU toxin-antitoxin system | Virulence |
66 | yeeW | YP_002392925.1 | 3272276-3272764 | 489 | + | hypothetical protein | Virulence |
67 | NA | YP_002392926.1 | 3272731-3272973 | 243 | + | hypothetical protein | Virulence |
68 | NA | YP_002392927.1 | 3273058-3273903 | 846 | + | hypothetical protein | Virulence |
69 | NA | YP_002392928.1 | 3273974-3275509 | 1536 | + | hypothetical protein | - |
70 | NA | - | 3275921-3276076 | 156 | + | - | - |
71 | kpsF | YP_002392929.1 | 3276850-3277869 | 1020 | + | Polysialic acid capsule expression protein | Virulence |
72 | kpsE | YP_002392930.1 | 3277941-3279089 | 1149 | + | Capsule polysaccharide export inner-membrane protein | Virulence |
73 | kpsD | YP_002392931.1 | 3279110-3280789 | 1680 | + | Polysialic acid transport protein precursor | Virulence |
74 | kpsU | YP_002392932.1 | 3280799-3281539 | 741 | + | 3-deoxy-manno-octulosonate cytidylyltransferase | Virulence |
75 | kpsC | YP_002392933.1 | 3281536-3283563 | 2028 | + | Capsule polysaccharide export protein | Virulence |
76 | kpsS | YP_002392934.1 | 3283598-3284803 | 1206 | + | Capsule polysaccharide export protein | Virulence |
77 | neuE | YP_002392935.1 | 3286172-3287407 | 1236 | - | polysialic acid biosynthesis protein | - |
78 | neuC | YP_002392936.1 | 3287313-3288488 | 1176 | - | UDP-N-acetylglucosamine 2-epimerase | Virulence |
79 | neuA | YP_002392937.1 | 3288485-3289741 | 1257 | - | N-acylneuraminate cytidylyltransferase | - |
80 | neuB | YP_002392938.1 | 3289741-3290781 | 1041 | - | N-acylneuraminate-9-phosphate synthase | Virulence |
81 | neuD | YP_002392939.1 | 3290778-3291401 | 624 | - | NeuD protein involved in sialic acid synthesis | - |
82 | kpsT | YP_002392940.1 | 3291451-3292110 | 660 | - | Polysialic acid transport ATP-binding protein | Virulence |
83 | kpsM | YP_002392941.1 | 3292107-3292943 | 837 | - | Polysialic acid transport protein | Virulence |
84 | yghD | YP_002392942.1 | 3293941-3294477 | 537 | - | general secretion pathway protein YghD | Virulence |
85 | yghE | YP_002392943.1 | 3294479-3295657 | 1179 | - | GspL-like protein | Virulence |
86 | NA | YP_002392944.1 | 3295654-3296631 | 978 | - | type II secretion protein (GspK-like) | Virulence |
87 | NA | YP_002392945.1 | 3296628-3297233 | 606 | - | hypothetical protein | Virulence |
88 | NA | YP_002392946.1 | 3297230-3297601 | 372 | - | type II secretion protein (GspI-like) | Virulence |
89 | NA | YP_002392947.1 | 3297598-3298161 | 564 | - | hypothetical protein | Virulence |
90 | NA | YP_002392948.1 | 3298165-3298647 | 483 | - | general secretion pathway protein G precursor (epsG-like) | Virulence |
91 | epsF | YP_002392949.1 | 3298637-3299860 | 1224 | - | General secretion pathway protein F | Virulence |
92 | epsE | YP_002392950.1 | 3299860-3301353 | 1494 | - | general secretion pathway protein E | Virulence |
93 | epsD | YP_002392951.1 | 3301353-3303413 | 2061 | - | general secretion pathway protein D | Virulence |
94 | yghF | YP_002392952.1 | 3303443-3304273 | 831 | - | type II secretion protein GspC | Virulence |
95 | yghG | YP_002392953.1 | 3304420-3304830 | 411 | - | hypothetical protein | - |
96 | pppA | YP_002392954.1 | 3304896-3305705 | 810 | - | bifunctional prepilin leader peptidase and methylase | - |
97 | yghJ | YP_002392955.1 | 3305869-3310449 | 4581 | - | inner membrane lipoprotein | Virulence |
98 | yghK | YP_002392956.1 | 3310915-3312597 | 1683 | - | glycolate transporter | - |
99 | glcB | YP_002392957.1 | 3312953-3315124 | 2172 | - | malate synthase G | - |
100 | glcG | YP_002392958.1 | 3315146-3315550 | 405 | - | hypothetical protein | - |
101 | glcF | YP_002392959.1 | 3315555-3316778 | 1224 | - | glycolate oxidase iron-sulfur subunit | - |
102 | glcE | YP_002392960.1 | 3316789-3317841 | 1053 | - | glycolate oxidase FAD binding subunit | - |
103 | glcD | YP_002392961.1 | 3317841-3319340 | 1500 | - | glycolate oxidase subunit GlcD | - |
104 | glcC | YP_002392962.1 | 3319591-3320355 | 765 | + | DNA-binding transcriptional regulator GlcC | - |
105 | yghO | YP_002392963.1 | 3320362-3321504 | 1143 | - | DNA-binding transcriptional regulator | - |
106 | NA | - | 3321848-3323599 | 1752 | + | - | - |
107 | NA | YP_002392964.1 | 3323386-3324510 | 1125 | + | epimerase | - |
108 | NA | YP_002392965.1 | 3324542-3324790 | 249 | + | hypothetical protein | - |
109 | NA | YP_002392966.1 | 3324790-3325962 | 1173 | + | 8-amino-7-oxononanoate synthase | - |
110 | NA | YP_002392967.1 | 3325997-3327157 | 1161 | - | hypothetical protein | - |
111 | NA | YP_002392968.1 | 3327073-3328143 | 1071 | - | hypothetical protein | - |
112 | NA | YP_002392969.1 | 3328174-3328734 | 561 | - | transcriptional regulator | - |
113 | NA | YP_002392970.1 | 3328734-3329570 | 837 | - | hypothetical protein | - |