PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli ED1a (NC_011745)
Location : 233654 - 266694 bp
Size : 33041 bp
GC content : 52.8 %
GC bias (=GCregion - GCgenome) : 2.08 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 233654-233730 77 + tRNA-Asp-
2dkgB YP_002396289.1 233893-234696 804 + 2,5-diketo-D-gluconate reductase B-
3yafC YP_002396290.1 234693-235607 915 - putative DNA-binding transcriptional regulator-
4yafD YP_002396291.1 235848-236648 801 + hypothetical protein-
5yafE YP_002396292.1 236726-237496 771 + putative S-adenosyl-L-methionine-dependent methyltransferase-
6mltD YP_002396293.1 237543-238901 1359 - membrane-bound lytic murein transglycosylase D-
7gloB YP_002396294.1 238973-239728 756 - hydroxyacylglutathione hydrolase-
8yafS YP_002396295.1 239762-240484 723 + putative S-adenosyl-L-methionine-dependent methyltransferase-
9rnhA YP_002396296.1 240481-240948 468 - ribonuclease H-
10dnaQ YP_002396297.1 241013-241744 732 + DNA polymerase III subunit epsilon-
11tRNA-Asp - 241877-241953 77 + tRNA-Asp-
12yafT YP_002396298.1 242282-243067 786 + putative aminopeptidase-
13NA YP_002396299.1 243407-243907 501 - hypothetical protein-
14NA - 243904-244023 120 - --
15NA - 244078-244617 540 - --
16NA - 244554-245345 792 - --
17NA YP_002396300.1 245272-248799 3528 - hypothetical protein-
18NA YP_002396301.1 248819-250327 1509 - hypothetical protein-
19NA YP_002396302.1 250266-251009 744 - hypothetical protein-
20NA YP_002396303.1 251006-253768 2763 - putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activityVirulence
21NA YP_002396304.1 253778-254542 765 - hypothetical protein-
22NA YP_002396305.1 254547-255893 1347 - hypothetical proteinVirulence
23NA YP_002396306.1 255896-256420 525 - hypothetical protein-
24NA YP_002396307.1 256417-257709 1293 - hypothetical protein-
25NA YP_002396308.1 257714-258763 1050 - hypothetical protein-
26NA YP_002396309.1 258727-260586 1860 - hypothetical proteinVirulence
27NA YP_002396310.1 260574-260999 426 - hypothetical protein-
28NA YP_002396311.1 261004-262488 1485 - hypothetical proteinVirulence
29NA YP_002396312.1 262511-263065 555 - hypothetical proteinVirulence
30NA YP_002396313.1 263724-264242 519 + hypothetical protein-
31NA YP_002396314.1 264463-266694 2232 + putative VgrG/E protein associated with Rhs elements-


tRNA-Asp tRNA-Asp PI: Esc.17aec32 aec30 aec29 aec27 aec26 aec25 aec24 aec23 aec22 aec19 aec18 aec17 aec16 aec15 PI: Esc.G2.NC_008563_P1APECO1_t03yafT aec32 aec30 aec29 aec28 aec27 aec26 aec25 aec24 aec23 aec22 APECO1_1761 aec19 aec18 aec17 aec16 aec15 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -orf23

• PAIs homologous to this region

AGI-1 (Escherichia coli BEN2908)
PAI II APEC-O1 (Escherichia coli APEC O1)
tcd island (Photorhabdus luminescens W14)