PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli 55989 (NC_011748)
Location : 3429643 - 3482331 bp
Size : 52689 bp
GC content : 52.2 %
GC bias (=GCregion - GCgenome) : 1.58 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA YP_002404307.1 3429643-3429834 192 + hypothetical protein-
2NA YP_002404308.1 3429887-3430195 309 - hypothetical proteinVirulence
3NA YP_002404309.1 3430216-3430875 660 - hypothetical proteinVirulence
4NA YP_002404310.1 3431148-3431621 474 - hypothetical proteinVirulence
5NA YP_002404311.1 3431557-3431946 390 - hypothetical proteinVirulence
6NA YP_002404312.1 3432108-3432677 570 - hypothetical proteinVirulence
7NA YP_002404313.1 3432881-3433054 174 + hypothetical protein-
8NA YP_002404314.1 3432924-3433127 204 - hypothetical protein-
9NA YP_002404315.1 3433294-3433506 213 - hemolysin expression-modulating proteinVirulence
10NA - 3434133-3434411 279 + --
11NA YP_002404316.1 3434470-3435069 600 + hypothetical proteinVirulence
12NA YP_002404317.1 3435055-3435291 237 - hypothetical protein-
13NA YP_002404318.1 3436564-3437583 1020 + hypothetical proteinVirulence
14NA YP_002404319.1 3437654-3438565 912 + GTPaseVirulence
15flu YP_002404320.1 3438893-3442018 3126 + antigen 43 (Ag43) phase-variable biofilm formation autotransporter; CP4-44 prophageVirulence
16NA YP_002404321.1 3442133-3444655 2523 + membrane protein, yeeRVirulence
17NA YP_002404322.1 3444731-3445186 456 + hypothetical proteinVirulence
18NA YP_002404323.1 3445265-3445498 234 + hypothetical proteinVirulence
19NA YP_002404324.1 3445598-3446416 819 + hypothetical proteinVirulence
20NA - 3446718-3447191 474 + --
21yeeS YP_002404325.1 3447237-3447683 447 + DNA repair protein; CP4-44 prophageVirulence
22yeeT YP_002404326.1 3447770-3447991 222 + CP4-44 prophageVirulence
23yeeU YP_002404327.1 3448071-3448448 378 + antitoxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophageVirulence
24yeeV YP_002404328.1 3448390-3448872 483 + toxin of the YeeV-YeeU toxin-antitoxin systemVirulence
25yeeW YP_002404329.1 3448869-3449291 423 + hypothetical protein-
26NA YP_002404330.1 3449376-3450218 843 + hypothetical proteinVirulence
27yghD YP_002404331.1 3450499-3451035 537 - general secretion pathway protein YghDVirulence
28yghE YP_002404332.1 3451037-3452215 1179 - GspL-like proteinVirulence
29NA YP_002404333.1 3452212-3453189 978 - type II secretion protein (GspK-like)Virulence
30NA YP_002404334.1 3453192-3453791 600 - hypothetical proteinVirulence
31NA YP_002404335.1 3453788-3454159 372 - type II secretion protein (GspI-like)Virulence
32NA YP_002404336.1 3454156-3454719 564 - hypothetical proteinVirulence
33NA YP_002404337.1 3454723-3455205 483 - general secretion pathway protein G precursor (epsG-like)Virulence
34epsF YP_002404338.1 3455195-3456418 1224 - General secretion pathway protein FVirulence
35epsE YP_002404339.1 3456418-3457911 1494 - general secretion pathway protein EVirulence
36epsD YP_002404340.1 3457911-3459971 2061 - general secretion pathway protein DVirulence
37yghF YP_002404341.1 3460001-3460960 960 - type II secretion protein GspCVirulence
38yghG YP_002404342.1 3460978-3461388 411 - hypothetical protein-
39pppA YP_002404343.1 3461454-3462263 810 - bifunctional prepilin leader peptidase and methylase-
40yghJ YP_002404344.1 3462403-3466986 4584 - inner membrane lipoproteinVirulence
41NA YP_002404345.1 3467116-3467328 213 + hypothetical protein-
42yghK YP_002404346.1 3467454-3469136 1683 - glycolate transporter-
43glcB YP_002404347.1 3469492-3471663 2172 - malate synthase G-
44glcG YP_002404348.1 3471685-3472089 405 - hypothetical protein-
45glcF YP_002404349.1 3472094-3473317 1224 - glycolate oxidase iron-sulfur subunit-
46glcE YP_002404350.1 3473328-3474380 1053 - glycolate oxidase FAD binding subunit-
47glcD YP_002404351.1 3474380-3475879 1500 - glycolate oxidase subunit GlcD-
48glcC - 3476070-3476726 657 + --
49NA YP_002404352.1 3476720-3477223 504 - transposase ORF B IS1-
50insA YP_002404353.1 3477142-3477417 276 - IS1 repressor protein InsA-
51NA - 3477459-3477551 93 + --
52NA YP_002404354.1 3477551-3478723 1173 + 8-amino-7-oxononanoate synthase-
53NA YP_002404355.1 3478758-3479918 1161 - hypothetical protein-
54NA YP_002404356.1 3479834-3480904 1071 - hypothetical protein-
55NA YP_002404357.1 3480935-3481498 564 - transcriptional regulator-
56NA YP_002404358.1 3481507-3482331 825 - hypothetical protein-