PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli IAI39 (NC_011750)
Location : 4760937 - 4802186 bp
Size : 41250 bp
GC content : 47.3 %
GC bias (=GCregion - GCgenome) : -3.32 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1lysU YP_002410423.1 4760937-4762454 1518 - lysyl-tRNA synthetaseVirulence
2yjdL YP_002410424.1 4762691-4764061 1371 - putative transporter-
3cadA YP_002410425.1 4764202-4766349 2148 - lysine decarboxylase 1Virulence
4cadB YP_002410426.1 4766429-4767763 1335 - lysine/cadaverine antiporterVirulence
5cadC YP_002410427.1 4768129-4769667 1539 - DNA-binding transcriptional activator CadC-
6NA YP_002410428.1 4770471-4771319 849 - hypothetical protein-
7NA YP_002410429.1 4771394-4771720 327 + transposase ORF A, IS629-
8NA YP_002410430.1 4771720-4772607 888 + transposase ORF B, IS629-
9NA YP_002410431.1 4772610-4772873 264 - hypothetical protein-
10NA YP_002410432.1 4772944-4773789 846 - hypothetical proteinVirulence
11NA YP_002410433.1 4773874-4774122 249 - hypothetical proteinVirulence
12yeeW YP_002410434.1 4774089-4774577 489 - hypothetical proteinVirulence
13yeeV YP_002410435.1 4774574-4774951 378 - toxin of the YeeV-YeeU toxin-antitoxin system; CP4-44 prophageVirulence
14yeeU - 4775041-4775202 162 - --
15yeeT YP_002410436.1 4775486-4775707 222 - hypothetical proteinVirulence
16yeeS YP_002410437.1 4775770-4776216 447 - putative DNA repair protein; CP4-44 prophageVirulence
17NA YP_002410438.1 4776261-4776746 486 - putative antirestriction proteinVirulence
18NA YP_002410439.1 4776837-4777655 819 - hypothetical proteinVirulence
19NA YP_002410440.1 4777745-4777978 234 - hypothetical proteinVirulence
20NA YP_002410441.1 4777984-4778766 783 - hypothetical proteinVirulence
21NA YP_002410442.1 4779518-4779673 156 - hypothetical protein-
22NA YP_002410443.1 4779692-4780576 885 - putative GTPaseVirulence
23NA YP_002410444.1 4780677-4781900 1224 + hypothetical proteinVirulence
24NA YP_002410445.1 4782894-4783220 327 + transposase ORF A, IS629-
25NA YP_002410446.1 4783217-4784107 891 + transposase ORF B, IS629-
26NA YP_002410447.1 4784164-4784337 174 + hypothetical proteinVirulence
27papI YP_002410448.1 4784680-4784913 234 - pap operon regulatory protein PapIVirulence
28NA YP_002410449.1 4785188-4785358 171 + hypothetical protein-
29papB YP_002410450.1 4785345-4785659 315 + pap operon regulatory protein PapBVirulence
30papA YP_002410451.1 4785833-4786429 597 + major pilin protein PapAVirulence
31papH YP_002410452.1 4786493-4787080 588 + minor pilin protein PapHVirulence
32papC YP_002410453.1 4787118-4789649 2532 + outer membrane usher protein PapCVirulence
33papD YP_002410454.1 4789720-4790454 735 + Chaperone protein PapDVirulence
34papJ YP_002410455.1 4790491-4791072 582 + P pilus assembly protein PapJVirulence
35papK YP_002410456.1 4791079-4791618 540 + fimbrial adapter PapKVirulence
36papE YP_002410457.1 4791627-4792166 540 + fimbrial tip protein PapEVirulence
37papF YP_002410458.1 4792241-4792741 501 + fimbrial adapter PapFVirulence
38papG YP_002410459.1 4792785-4793795 1011 + fimbrial PapG proteinVirulence
39tia YP_002410460.1 4794146-4794901 756 + Tia invasion determinantVirulence
40NA YP_002410461.1 4795076-4796575 1500 + putative membrane-associated, metal-dependent hydrolaseVirulence
41NA YP_002410462.1 4796684-4800211 3528 - putative superfamily I DNA helicaseVirulence
42int YP_002410463.1 4800651-4801913 1263 - Prophage integrase-
43tRNA-Phe - 4802111-4802186 76 - tRNA-Phe-


tRNA-Phe