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Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Escherichia coli IAI39 (NC_011750) Location : 3545466 - 3635858 bp Size : 90393 bp GC content : 48.7 % GC bias (=GCregion - GCgenome) : -1.93 % |
No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
1 | tRNA-Phe | - | 3545466-3545541 | 76 | + | tRNA-Phe | - |
2 | int | YP_002409310.1 | 3545739-3547004 | 1266 | + | Prophage integrase | - |
3 | NA | YP_002409311.1 | 3547230-3548303 | 1074 | + | SHI-2 pathogenicity island protein | Virulence |
4 | insA | YP_002409312.1 | 3548833-3549108 | 276 | + | IS1 repressor protein InsA | - |
5 | insB | YP_002409313.1 | 3549027-3549530 | 504 | + | IS1 transposase InsAB' | - |
6 | NA | YP_002409314.1 | 3549997-3550548 | 552 | - | putative HTH-type transcriptional regulator | Virulence |
7 | NA | YP_002409315.1 | 3550715-3551083 | 369 | - | hypothetical protein | - |
8 | NA | YP_002409316.1 | 3551553-3551804 | 252 | - | putative transposase ORF A, IS3 family | - |
9 | papG | - | 3552009-3552638 | 630 | - | - | - |
10 | papG | - | 3552571-3553014 | 444 | - | - | - |
11 | papF | YP_002409317.1 | 3553058-3553591 | 534 | - | fimbrial adapter PapF | Virulence |
12 | papE | YP_002409318.1 | 3553636-3554175 | 540 | - | fimbrial tip protein PapE | Virulence |
13 | insB | YP_002409319.1 | 3554212-3554715 | 504 | - | IS1 transposase InsAB' | - |
14 | insA | YP_002409320.1 | 3554634-3554909 | 276 | - | IS1 repressor protein InsA | - |
15 | papA | - | 3554938-3555207 | 270 | - | - | - |
16 | papA | - | 3555204-3555539 | 336 | - | - | - |
17 | papB | - | 3555714-3555878 | 165 | - | - | - |
18 | papI | YP_002409321.1 | 3556432-3556665 | 234 | + | pap operon regulatory protein PapI | Virulence |
19 | NA | YP_002409322.1 | 3556811-3557257 | 447 | - | transposase ORF B (fragment), IS629 | - |
20 | NA | YP_002409323.1 | 3557374-3558897 | 1524 | - | Group II intron-encoded reverse transcriptase/maturase | Virulence |
21 | NA | YP_002409324.1 | 3559489-3559779 | 291 | - | transposase ORF B (fragment), IS629 | - |
22 | NA | - | 3559945-3560358 | 414 | + | - | - |
23 | NA | - | 3560150-3561118 | 969 | + | - | - |
24 | NA | YP_002409325.1 | 3561115-3561915 | 801 | + | transposase IstB, IS21 | - |
25 | NA | YP_002409326.1 | 3561955-3562104 | 150 | - | transposase ORF B (fragment), IS629 | - |
26 | NA | YP_002409327.1 | 3562104-3562430 | 327 | - | transposase ORF A, IS629 | - |
27 | NA | YP_002409328.1 | 3563170-3563916 | 747 | - | putative transposase (fragment) | - |
28 | NA | YP_002409329.1 | 3564462-3564728 | 267 | + | hypothetical protein | Virulence |
29 | NA | YP_002409330.1 | 3564770-3565330 | 561 | + | putative transcriptional regulator | Virulence |
30 | NA | YP_002409331.1 | 3565340-3565798 | 459 | + | hypothetical protein | Virulence |
31 | insC | YP_002409332.1 | 3566462-3566836 | 375 | + | IS2 insertion element repressor InsA; KpLE2 phage-like element | - |
32 | insD | YP_002409333.1 | 3566829-3567734 | 906 | + | IS2 insertion element transposase InsAB'; CP4-44 prophage | - |
33 | shiF | YP_002409334.1 | 3567847-3569040 | 1194 | - | putative membrane transport protein, major facilitator superfamily | Virulence |
34 | iucA | YP_002409335.1 | 3569110-3570900 | 1791 | + | aerobactin siderophore biosynthesis protein | Virulence |
35 | iucB | YP_002409336.1 | 3570901-3571848 | 948 | + | aerobactin siderophore biosynthesis N(6)-hydroxylysine acetylase | Virulence |
36 | iucC | YP_002409337.1 | 3571848-3573590 | 1743 | + | Aerobactin siderophore biosynthesis protein | Virulence |
37 | iucD | YP_002409338.1 | 3573587-3574864 | 1278 | + | L-lysine 6-monooxygenase | Virulence |
38 | iutA | YP_002409339.1 | 3574946-3577147 | 2202 | + | Ferric aerobactin receptor | Virulence |
39 | sat | - | 3578080-3580422 | 2343 | + | - | - |
40 | NA | YP_002409340.1 | 3580474-3580800 | 327 | + | transposase ORF A, IS629 | - |
41 | NA | YP_002409341.1 | 3580797-3581279 | 483 | + | transposase ORF B (fragment), IS629 | - |
42 | NA | YP_002409342.1 | 3581871-3583394 | 1524 | + | Group II intron-encoded reverse transcriptase/maturase | Virulence |
43 | NA | YP_002409343.1 | 3583511-3583957 | 447 | + | transposase ORF B (fragment), IS629 | - |
44 | kpsF | - | 3584014-3584199 | 186 | + | - | - |
45 | kpsE | YP_002409344.1 | 3584271-3585419 | 1149 | + | capsule polysaccharide export inner-membrane protein | Virulence |
46 | kpsD | YP_002409345.1 | 3585440-3587119 | 1680 | + | polysialic acid transport protein | Virulence |
47 | kpsU | YP_002409346.1 | 3587129-3587869 | 741 | + | 3-deoxy-manno-octulosonate cytidylyltransferase | Virulence |
48 | kpsC | YP_002409347.1 | 3587866-3589893 | 2028 | + | capsule polysaccharide export protein | Virulence |
49 | kpsS | YP_002409348.1 | 3589928-3591133 | 1206 | + | capsule polysaccharide export protein | Virulence |
50 | neuS | YP_002409349.1 | 3591283-3592512 | 1230 | - | poly-alpha-2,8 sialosyl sialyltransferase | - |
51 | neuE | YP_002409350.1 | 3592502-3593650 | 1149 | - | polysialic acid biosynthesis protein | - |
52 | neuC | YP_002409351.1 | 3593643-3594818 | 1176 | - | UDP-N-acetylglucosamine 2-epimerase | Virulence |
53 | neuA | YP_002409352.1 | 3594815-3596071 | 1257 | - | N-acylneuraminate cytidylyltransferase | - |
54 | neuB | YP_002409353.1 | 3596071-3597111 | 1041 | - | N-acylneuraminate-9-phosphate synthase | Virulence |
55 | neuD | YP_002409354.1 | 3597108-3597731 | 624 | - | NeuD protein involved in sialic acid synthesis | - |
56 | kpsT | YP_002409355.1 | 3597781-3598440 | 660 | - | polysialic acid transport ATP-binding protein | Virulence |
57 | kpsM | YP_002409356.1 | 3598437-3599273 | 837 | - | polysialic acid transport protein | Virulence |
58 | yghD | YP_002409357.1 | 3600272-3600808 | 537 | - | putative general secretion pathway protein YghD | Virulence |
59 | yghE | YP_002409358.1 | 3600810-3601988 | 1179 | - | GspL-like protein | Virulence |
60 | NA | YP_002409359.1 | 3601985-3602962 | 978 | - | GspK-like type II secretion protein | Virulence |
61 | NA | YP_002409360.1 | 3602959-3603564 | 606 | - | hypothetical protein | Virulence |
62 | NA | YP_002409361.1 | 3603561-3603932 | 372 | - | putative GspI-like type II secretion protein | Virulence |
63 | NA | YP_002409362.1 | 3603929-3604492 | 564 | - | hypothetical protein | Virulence |
64 | NA | YP_002409363.1 | 3604496-3604978 | 483 | - | putative general secretion pathway protein G (epsG-like) | Virulence |
65 | epsF | YP_002409364.1 | 3604968-3606191 | 1224 | - | General secretion pathway protein F | Virulence |
66 | epsE | YP_002409365.1 | 3606191-3607684 | 1494 | - | general secretion pathway protein E | Virulence |
67 | epsD | YP_002409366.1 | 3607684-3609744 | 2061 | - | general secretion pathway protein D | Virulence |
68 | yghF | YP_002409367.1 | 3609774-3610733 | 960 | - | putative type II secretion protein GspC | Virulence |
69 | yghG | YP_002409368.1 | 3610751-3611161 | 411 | - | hypothetical protein | - |
70 | pppA | YP_002409369.1 | 3611227-3612036 | 810 | - | bifunctional prepilin leader peptidase and methylase | Virulence |
71 | yghJ | YP_002409370.1 | 3612166-3616740 | 4575 | - | inner membrane lipoprotein | Virulence |
72 | NA | YP_002409371.1 | 3616873-3617073 | 201 | + | hypothetical protein | - |
73 | yghK | YP_002409372.1 | 3617207-3618889 | 1683 | - | glycolate transporter | - |
74 | glcB | YP_002409373.1 | 3619244-3621415 | 2172 | - | malate synthase G | - |
75 | glcG | YP_002409374.1 | 3621437-3621841 | 405 | - | hypothetical protein | - |
76 | glcF | YP_002409375.1 | 3621846-3623069 | 1224 | - | glycolate oxidase iron-sulfur subunit | - |
77 | glcE | YP_002409376.1 | 3623080-3624132 | 1053 | - | glycolate oxidase FAD binding subunit | - |
78 | glcD | YP_002409377.1 | 3624132-3625631 | 1500 | - | glycolate oxidase subunit GlcD | - |
79 | glcC | YP_002409378.1 | 3625882-3626646 | 765 | + | DNA-binding transcriptional regulator GlcC | - |
80 | yghO | YP_002409379.1 | 3626653-3627795 | 1143 | - | putative DNA-binding transcriptional regulator | - |
81 | NA | - | 3628139-3629887 | 1749 | + | - | - |
82 | NA | YP_002409380.1 | 3629884-3630798 | 915 | + | putative epimerase | - |
83 | NA | YP_002409381.1 | 3630830-3631078 | 249 | + | hypothetical protein | - |
84 | NA | YP_002409382.1 | 3631078-3632250 | 1173 | + | putative 8-amino-7-oxononanoate synthase | - |
85 | NA | YP_002409383.1 | 3632285-3633364 | 1080 | - | hypothetical protein | - |
86 | NA | YP_002409384.1 | 3633361-3634431 | 1071 | - | hypothetical protein | - |
87 | NA | YP_002409385.1 | 3634462-3635025 | 564 | - | putative transcriptional regulator | - |
88 | NA | YP_002409386.1 | 3635034-3635858 | 825 | - | hypothetical protein | - |