PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Salmonella enterica RKS4594 (NC_012125)
Location : 290850 - 326375 bp
Size : 35526 bp
GC content : 54.0 %
GC bias (=GCregion - GCgenome) : 1.79 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 290850-290926 77 + tRNA-Asp-
2dkgB YP_002635894.1 291091-291894 804 + 2,5-diketo-D-gluconate reductase B-
3yafC YP_002635895.1 291916-292830 915 - hypothetical protein-
4NA YP_002635896.1 292935-294110 1176 + drug efflux protein-
5yafD YP_002635897.1 294242-295042 801 + hypothetical protein-
6yafE YP_002635898.1 295120-295890 771 + methyltransferase-
7mltD YP_002635899.1 295946-297313 1368 - membrane-bound lytic murein transglycosylase D-
8gloB YP_002635900.1 297385-298140 756 - hydroxyacylglutathione hydrolase-
9yafS YP_002635901.1 298229-298897 669 + hypothetical protein-
10rnhA YP_002635902.1 298894-299361 468 - ribonuclease H-
11dnaQ YP_002635903.1 299416-300156 741 + DNA polymerase III subunit epsilon-
12tRNA-Asp - 300290-300366 77 + tRNA-Asp-
13NA YP_002635904.1 300684-301742 1059 - cytoplasmic protein-
14NA YP_002635905.1 301753-302748 996 - hypothetical protein-
15NA YP_002635906.1 302745-304628 1884 - hypothetical proteinVirulence
16NA YP_002635907.1 304644-305138 495 - hypothetical protein-
17NA YP_002635908.1 305135-305959 825 - hypothetical protein-
18NA YP_002635909.1 305946-306836 891 - hypothetical protein-
19NA YP_002635911.1 307216-309855 2640 + ClpB-like proteinVirulence
20NA YP_002635912.1 309955-310497 543 + hypothetical proteinVirulence
21NA YP_002635913.1 310521-312029 1509 + cytoplasmic proteinVirulence
22NA YP_002635914.1 312303-312482 180 + hypothetical protein-
23NA YP_002635915.1 312660-312941 282 + cytoplasmic protein-
24NA YP_002635916.1 313193-313678 486 + hypothetical proteinVirulence
25NA YP_002635917.1 313790-314281 492 + lipoprotein-
26NA YP_002635918.1 314285-315628 1344 + hypothetical protein-
27NA YP_002635919.1 315625-316929 1305 + hypothetical protein-
28NA YP_002635920.1 316934-317707 774 + hypothetical protein-
29NA YP_002635921.1 318119-318340 222 + shiga-like toxin A subunit-
30NA YP_002635922.1 318373-321999 3627 + hypothetical protein-
31NA YP_002635923.1 322032-322787 756 + hypothetical protein-
32NA YP_002635924.1 322784-323200 417 + hypothetical protein-
33NA YP_002635925.1 323224-323745 522 + cytoplasmic protein-
34NA YP_002635926.1 323886-324095 210 + hypothetical protein-
35NA YP_002635927.1 324141-326375 2235 + Rhs family protein-


tRNA-Asp tRNA-Asp PI: Sal.6.NC_003198_P1-STY0288 STY0289 STY0290 STY0291 STY0292 STY0294 STY0297 STY0302 STY0303 STY0304 STY0305 STY0306 STY0310 STY0316 STY0317 STY0319 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -

• PAIs homologous to this region

tcd island (Photorhabdus luminescens W14)
SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18)