PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli 11368 (NC_013361)
Location : 5539977 - 5583190 bp
Size : 43214 bp
GC content : 53.0 %
GC bias (=GCregion - GCgenome) : 2.35 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA - 5539977-5540795 819 - --
2NA YP_003232323.1 5540831-5541133 303 - IS600 transposase OrfA-
3NA YP_003232324.1 5541403-5541708 306 + IS911 regulatory protein OrfA-
4NA - 5541735-5542334 600 + --
5NA YP_003232325.1 5542500-5542913 414 + hypothetical proteinVirulence
6fecE YP_003232326.1 5543471-5544238 768 - iron-dicitrate transporter ATP-binding subunitVirulence
7fecD YP_003232327.1 5544239-5545195 957 - iron-dicitrate transporter subunit FecDVirulence
8fecC YP_003232328.1 5545192-5546190 999 - iron-dicitrate transporter permease subunitVirulence
9fecB YP_003232329.1 5546187-5547089 903 - iron-dicitrate transporter substrate-binding subunitVirulence
10NA YP_003232330.1 5547134-5549458 2325 - ferric citrate outer membrane transporter fecAVirulence
11NA YP_003232331.1 5549545-5550498 954 - fec operon regulator FecRVirulence
12NA YP_003232332.1 5550495-5551016 522 - RNA polymerase sigma factor FecIVirulence
13NA YP_003232333.1 5551308-5551583 276 + IS1 repressor protein InsA-
14NA - 5551502-5551795 294 + --
15NA - 5551796-5552005 210 + --
16NA YP_003232334.1 5552767-5553024 258 + hypothetical protein-
17NA YP_003232335.1 5553757-5555115 1359 + hypothetical proteinVirulence
18NA - 5555354-5556739 1386 - --
19NA YP_003232336.1 5556789-5557136 348 - hypothetical protein-
20NA YP_003232337.1 5557133-5557513 381 - hypothetical protein-
21NA YP_003232338.1 5557868-5558302 435 - hypothetical proteinVirulence
22NA YP_003232339.1 5558290-5558691 402 - hypothetical proteinVirulence
23NA YP_003232340.1 5558857-5559426 570 - hypothetical proteinVirulence
24NA YP_003232341.1 5560166-5561737 1572 - hypothetical protein-
25NA YP_003232342.1 5561757-5562104 348 - hypothetical protein-
26NA YP_003232343.1 5562104-5562751 648 - hypothetical protein-
27NA YP_003232344.1 5562849-5563025 177 - haemolysin expression modulating protein HhaVirulence
28NA YP_003232345.1 5563118-5563324 207 + hypothetical protein-
29NA YP_003232346.1 5563731-5563937 207 + transcriptional regulatorVirulence
30NA - 5564125-5564358 234 + --
31NA YP_003232347.1 5564387-5564791 405 + hypothetical protein-
32NA YP_003232348.1 5564788-5565135 348 + hypothetical protein-
33NA YP_003232349.1 5565184-5566722 1539 + hypothetical protein-
34NA - 5566887-5567096 210 + --
35NA YP_003232350.1 5567418-5568902 1485 - hypothetical protein-
36NA YP_003232351.1 5570133-5571005 873 + hypothetical proteinVirulence
37NA YP_003232352.1 5571377-5574496 3120 + adhesinVirulence
38NA YP_003232353.1 5574847-5575149 303 + IS600 transposase OrfA-
39NA - 5575185-5576003 819 + --
40NA - 5576139-5578424 2286 + --
41NA YP_003232354.1 5578500-5578955 456 + hypothetical proteinVirulence
42NA YP_003232355.1 5579034-5579267 234 + hypothetical proteinVirulence
43NA YP_003232356.1 5579367-5580185 819 + hypothetical proteinVirulence
44NA YP_003232357.1 5580240-5580725 486 + hypothetical proteinVirulence
45NA YP_003232358.1 5580741-5581217 477 + DNA repair proteinVirulence
46NA YP_003232359.1 5581280-5581501 222 + hypothetical proteinVirulence
47NA YP_003232360.1 5581501-5581614 114 + hypothetical proteinVirulence
48NA YP_003232361.1 5581664-5582032 369 + hypothetical proteinVirulence
49NA YP_003232362.1 5582122-5582496 375 + hypothetical proteinVirulence
50NA YP_003232363.1 5582493-5582981 489 + hypothetical proteinVirulence
51NA YP_003232364.1 5582948-5583190 243 + hypothetical proteinVirulence