PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli CB9615 (NC_013941)
Location : 232216 - 266945 bp
Size : 34730 bp
GC content : 51.4 %
GC bias (=GCregion - GCgenome) : 0.88 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 232216-232294 79 + tRNA-Asp-
2dkgB YP_003497842.1 232456-233259 804 + 2,5-diketo-D-gluconic acid reductase B-
3yafC YP_003497843.1 233256-234170 915 - LysR family transcriptional regulator-
4yafD YP_003497844.1 234411-235211 801 + hypothetical protein-
5yafE YP_003497845.1 235289-236059 771 + methyltransferase, UbiE/COQ5 family-
6mltD YP_003497846.1 236107-237465 1359 - membrane-bound lytic murein transglycosylase D precursor-
7gloB YP_003497847.1 237537-238292 756 - hydroxyacylglutathione hydrolase-
8yafS YP_003497848.1 238308-239048 741 + hypothetical protein-
9rnhA YP_003497849.1 239045-239512 468 - RNase HI-
10dnaQ YP_003497850.1 239577-240308 732 + DNA polymerase III epsilon subunit-
11tRNA-Asp - 240440-240518 79 + tRNA-Asp-
12yafT YP_003497851.1 240845-241645 801 + hypothetical protein-
13NA YP_003497852.1 241830-242126 297 - hypothetical protein-
14NA YP_003497853.1 242123-242578 456 - hypothetical protein-
15NA YP_003497854.1 242575-243471 897 - hypothetical protein-
16yhhZ YP_003497855.1 243492-243971 480 - hypothetical protein-
17impA YP_003497856.1 243937-245436 1500 - ImpA domain protein-
18NA YP_003497857.1 245357-248821 3465 - macrophage toxin-
19impA YP_003497858.1 248900-250312 1413 - ImpA domain protein-
20NA YP_003497859.1 250317-251060 744 - type VI secretion-associated protein, VC_A0118 family-
21clpB YP_003497860.1 251057-253840 2784 - type VI secretion ATPase, ClpV1 familyVirulence
22NA YP_003497861.1 253849-254610 762 - hypothetical protein-
23NA YP_003497862.1 254615-255946 1332 - hypothetical proteinVirulence
24NA YP_003497863.1 255949-256473 525 - type VI secretion lipoprotein, VC_A0113 family-
25NA YP_003497864.1 256470-257480 1011 - hypothetical protein-
26NA YP_003497865.1 257774-258856 1083 - hypothetical proteinVirulence
27NA YP_003497866.1 258820-260670 1851 - hypothetical proteinVirulence
28NA YP_003497867.1 260674-261087 414 - hypothetical protein-
29NA - 261094-262569 1476 - --
30NA YP_003497868.1 262620-262844 225 - hypothetical protein-
31NA YP_003497869.1 262879-263379 501 - hypothetical proteinVirulence
32NA YP_003497870.1 263806-263949 144 + hypothetical protein-
33NA YP_003497871.1 264076-264594 519 + Hcp-
34NA YP_003497872.1 264627-264764 138 + hypothetical protein-
35vgrG YP_003497873.1 264804-266945 2142 + VgrG-


tRNA-Asp tRNA-Asp PI: Esc.17aec32 aec31 aec30 aec29 aec27 aec26 aec25 aec24 aec23 aec22 aec19 aec17 aec16 aec15 PI: Esc.G2.NC_008563_P1APECO1_t03yafT aec32 aec31 aec30 aec29 aec28 aec27 aec26 aec25 aec24 aec23 aec22 APECO1_1761 aec19 aec17 aec16 aec15 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -orf23

• PAIs homologous to this region

AGI-1 (Escherichia coli BEN2908)
PAI II APEC-O1 (Escherichia coli APEC O1)
tcd island (Photorhabdus luminescens W14)