PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli CB9615 (NC_013941)
Location : 4470714 - 4512998 bp
Size : 42285 bp
GC content : 40.3 %
GC bias (=GCregion - GCgenome) : -10.26 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Sec - 4470714-4470808 95 + tRNA-Sec-
2intL YP_003501848.1 4470932-4472185 1254 + CP4-like integrase-
3insN YP_003501849.1 4472284-4472631 348 + hypothetical protein-
4NA YP_003501850.1 4472844-4473497 654 + transposase-
5NA YP_003501851.1 4473494-4473658 165 + hypothetical protein-
6NA YP_003501852.1 4473748-4474122 375 + hypothetical proteinVirulence
7NA YP_003501853.1 4474119-4474610 492 + hypothetical proteinVirulence
8NA YP_003501854.1 4474604-4474819 216 + hypothetical proteinVirulence
9NA - 4474904-4475746 843 + --
10NA YP_003501855.1 4476081-4476314 234 + hypothetical protein-
11espF YP_003501856.1 4476749-4477513 765 - espFVirulence
12NA YP_003501857.1 4477598-4477876 279 - hypothetical proteinVirulence
13escF YP_003501858.1 4477882-4478103 222 - type III secretion apparatus needle proteinVirulence
14NA YP_003501859.1 4478139-4478546 408 - hypothetical proteinVirulence
15espB YP_003501860.1 4478553-4479491 939 - Secreted protein EspBVirulence
16espD YP_003501861.1 4479512-4480636 1125 - secreted protein EspDVirulence
17espA YP_003501862.1 4480649-4481227 579 - espAVirulence
18sepL YP_003501863.1 4481286-4482341 1056 - SepLVirulence
19escD YP_003501864.1 4482484-4483704 1221 + PasVirulence
20eae YP_003501865.1 4483968-4486772 2805 - Gamma intiminVirulence
21cesT YP_003501866.1 4486832-4487302 471 - Tir chaperoneVirulence
22tir YP_003501867.1 4487440-4489110 1671 - translocated intimin receptor TirVirulence
23NA YP_003501868.1 4489534-4490145 612 - hypothetical proteinVirulence
24NA YP_003501869.1 4490411-4490794 384 + hypothetical proteinVirulence
25NA YP_003501870.1 4490992-4491498 507 - hypothetical proteinVirulence
26sepQ YP_003501871.1 4491529-4492446 918 - sepQVirulence
27NA YP_003501872.1 4492409-4492825 417 - hypothetical proteinVirulence
28NA YP_003501873.1 4492818-4493195 378 - hypothetical proteinVirulence
29escN YP_003501874.1 4493198-4494538 1341 - escNVirulence
30escV YP_003501875.1 4494522-4496549 2028 - escVVirulence
31NA YP_003501876.1 4496546-4496899 354 - hypothetical proteinVirulence
32sepZ YP_003501877.1 4497084-4497383 300 + SepZVirulence
33NA YP_003501878.1 4497416-4497844 429 + hypothetical proteinVirulence
34escJ YP_003501879.1 4497847-4498419 573 + EscJVirulence
35sepD YP_003501880.1 4498425-4498880 456 + hypothetical proteinVirulence
36escC YP_003501881.1 4498880-4500418 1539 + escCVirulence
37cesD YP_003501882.1 4500432-4500887 456 + type III secretion low calcium response chaperone LcrH/SycDVirulence
38NA YP_003501883.1 4501271-4501684 414 - hypothetical proteinVirulence
39NA YP_003501884.1 4501739-4502110 372 - hypothetical proteinVirulence
40NA YP_003501885.1 4502288-4502764 477 + transglycosylase SLT domain proteinVirulence
41escU YP_003501886.1 4502761-4503798 1038 - secretion system apparatus protein SsaUVirulence
42escT YP_003501887.1 4503791-4504567 777 - escTVirulence
43escS YP_003501888.1 4504567-4504839 273 - EscSVirulence
44escR YP_003501889.1 4504836-4505489 654 - type III secretion system EscR proteinVirulence
45NA YP_003501890.1 4505494-4506189 696 - hypothetical proteinVirulence
46NA YP_003501891.1 4506134-4506733 600 - hypothetical proteinVirulence
47NA YP_003501892.1 4506730-4507053 324 - hypothetical proteinVirulence
48NA YP_003501893.1 4507057-4507275 219 - type III secretion system protein, YseE familyVirulence
49NA YP_003501894.1 4507290-4507679 390 - hypothetical proteinVirulence
50espG YP_003501895.1 4508913-4510109 1197 + hypothetical proteinVirulence
51NA YP_003501896.1 4510237-4511055 819 + hypothetical proteinVirulence
52NA YP_003501897.1 4511369-4511611 243 - hypothetical protein-
53NA YP_003501898.1 4511827-4512021 195 - hypothetical protein-
54yicL YP_003501899.1 4512075-4512998 924 + YicL-


tRNA-Sec