Type: Candidate PAI (PAI-like region overlapping GI(s)) Strain : Escherichia coli CB9615 (NC_013941) Location : 4470714 - 4512998 bp Size : 42285 bp GC content : 40.3 % GC bias (=GCregion - GCgenome) : -10.26 % |
No | Name | GenBank Accn | Location | Size(bp) | Strand | Product | Putative Virulence / Resistance* |
1 | tRNA-Sec | - | 4470714-4470808 | 95 | + | tRNA-Sec | - |
2 | intL | YP_003501848.1 | 4470932-4472185 | 1254 | + | CP4-like integrase | - |
3 | insN | YP_003501849.1 | 4472284-4472631 | 348 | + | hypothetical protein | - |
4 | NA | YP_003501850.1 | 4472844-4473497 | 654 | + | transposase | - |
5 | NA | YP_003501851.1 | 4473494-4473658 | 165 | + | hypothetical protein | - |
6 | NA | YP_003501852.1 | 4473748-4474122 | 375 | + | hypothetical protein | Virulence |
7 | NA | YP_003501853.1 | 4474119-4474610 | 492 | + | hypothetical protein | Virulence |
8 | NA | YP_003501854.1 | 4474604-4474819 | 216 | + | hypothetical protein | Virulence |
9 | NA | - | 4474904-4475746 | 843 | + | - | - |
10 | NA | YP_003501855.1 | 4476081-4476314 | 234 | + | hypothetical protein | - |
11 | espF | YP_003501856.1 | 4476749-4477513 | 765 | - | espF | Virulence |
12 | NA | YP_003501857.1 | 4477598-4477876 | 279 | - | hypothetical protein | Virulence |
13 | escF | YP_003501858.1 | 4477882-4478103 | 222 | - | type III secretion apparatus needle protein | Virulence |
14 | NA | YP_003501859.1 | 4478139-4478546 | 408 | - | hypothetical protein | Virulence |
15 | espB | YP_003501860.1 | 4478553-4479491 | 939 | - | Secreted protein EspB | Virulence |
16 | espD | YP_003501861.1 | 4479512-4480636 | 1125 | - | secreted protein EspD | Virulence |
17 | espA | YP_003501862.1 | 4480649-4481227 | 579 | - | espA | Virulence |
18 | sepL | YP_003501863.1 | 4481286-4482341 | 1056 | - | SepL | Virulence |
19 | escD | YP_003501864.1 | 4482484-4483704 | 1221 | + | Pas | Virulence |
20 | eae | YP_003501865.1 | 4483968-4486772 | 2805 | - | Gamma intimin | Virulence |
21 | cesT | YP_003501866.1 | 4486832-4487302 | 471 | - | Tir chaperone | Virulence |
22 | tir | YP_003501867.1 | 4487440-4489110 | 1671 | - | translocated intimin receptor Tir | Virulence |
23 | NA | YP_003501868.1 | 4489534-4490145 | 612 | - | hypothetical protein | Virulence |
24 | NA | YP_003501869.1 | 4490411-4490794 | 384 | + | hypothetical protein | Virulence |
25 | NA | YP_003501870.1 | 4490992-4491498 | 507 | - | hypothetical protein | Virulence |
26 | sepQ | YP_003501871.1 | 4491529-4492446 | 918 | - | sepQ | Virulence |
27 | NA | YP_003501872.1 | 4492409-4492825 | 417 | - | hypothetical protein | Virulence |
28 | NA | YP_003501873.1 | 4492818-4493195 | 378 | - | hypothetical protein | Virulence |
29 | escN | YP_003501874.1 | 4493198-4494538 | 1341 | - | escN | Virulence |
30 | escV | YP_003501875.1 | 4494522-4496549 | 2028 | - | escV | Virulence |
31 | NA | YP_003501876.1 | 4496546-4496899 | 354 | - | hypothetical protein | Virulence |
32 | sepZ | YP_003501877.1 | 4497084-4497383 | 300 | + | SepZ | Virulence |
33 | NA | YP_003501878.1 | 4497416-4497844 | 429 | + | hypothetical protein | Virulence |
34 | escJ | YP_003501879.1 | 4497847-4498419 | 573 | + | EscJ | Virulence |
35 | sepD | YP_003501880.1 | 4498425-4498880 | 456 | + | hypothetical protein | Virulence |
36 | escC | YP_003501881.1 | 4498880-4500418 | 1539 | + | escC | Virulence |
37 | cesD | YP_003501882.1 | 4500432-4500887 | 456 | + | type III secretion low calcium response chaperone LcrH/SycD | Virulence |
38 | NA | YP_003501883.1 | 4501271-4501684 | 414 | - | hypothetical protein | Virulence |
39 | NA | YP_003501884.1 | 4501739-4502110 | 372 | - | hypothetical protein | Virulence |
40 | NA | YP_003501885.1 | 4502288-4502764 | 477 | + | transglycosylase SLT domain protein | Virulence |
41 | escU | YP_003501886.1 | 4502761-4503798 | 1038 | - | secretion system apparatus protein SsaU | Virulence |
42 | escT | YP_003501887.1 | 4503791-4504567 | 777 | - | escT | Virulence |
43 | escS | YP_003501888.1 | 4504567-4504839 | 273 | - | EscS | Virulence |
44 | escR | YP_003501889.1 | 4504836-4505489 | 654 | - | type III secretion system EscR protein | Virulence |
45 | NA | YP_003501890.1 | 4505494-4506189 | 696 | - | hypothetical protein | Virulence |
46 | NA | YP_003501891.1 | 4506134-4506733 | 600 | - | hypothetical protein | Virulence |
47 | NA | YP_003501892.1 | 4506730-4507053 | 324 | - | hypothetical protein | Virulence |
48 | NA | YP_003501893.1 | 4507057-4507275 | 219 | - | type III secretion system protein, YseE family | Virulence |
49 | NA | YP_003501894.1 | 4507290-4507679 | 390 | - | hypothetical protein | Virulence |
50 | espG | YP_003501895.1 | 4508913-4510109 | 1197 | + | hypothetical protein | Virulence |
51 | NA | YP_003501896.1 | 4510237-4511055 | 819 | + | hypothetical protein | Virulence |
52 | NA | YP_003501897.1 | 4511369-4511611 | 243 | - | hypothetical protein | - |
53 | NA | YP_003501898.1 | 4511827-4512021 | 195 | - | hypothetical protein | - |
54 | yicL | YP_003501899.1 | 4512075-4512998 | 924 | + | YicL | - |