PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Variovorax paradoxus EPS (NC_014931)
Location : 3516299 - 3532189 bp
Size : 15891 bp
GC content : 63.6 %
GC bias (=GCregion - GCgenome) : -2.92 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA YP_004155563.1 3516299-3517456 1158 - type VI secretion protein-
2NA YP_004155564.1 3517453-3518454 1002 - hypothetical protein-
3NA YP_004155565.1 3518547-3519263 717 - type VI secretion system-associated-
4NA YP_004155566.1 3519276-3523274 3999 - type VI secretion protein icmf-
5NA YP_004155567.1 3523295-3524671 1377 - DotU family type IV/VI secretion system protein-
6NA YP_004155568.1 3524668-3526023 1356 - type VI secretion protein-
7NA YP_004155569.1 3526056-3526613 558 - type VI secretion lipoprotein-
8NA YP_004155570.1 3526735-3527220 486 - type VI secretion system effector, hcp1 familyVirulence
9NA YP_004155571.1 3527356-3528858 1503 - EvpB family type VI secretion proteinVirulence
10NA YP_004155572.1 3528880-3529425 546 - type VI secretion proteinVirulence
11NA YP_004155573.1 3529484-3532189 2706 - type VI secretion ATPase, clpv1 familyVirulence