PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Salmonella enterica D23580 (NC_016854)
Location : 294815 - 336616 bp
Size : 41802 bp
GC content : 54.4 %
GC bias (=GCregion - GCgenome) : 2.16 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 294815-294888 74 + tRNA-Asp-
2NA YP_005231333.1 295056-295859 804 + oxidoreductase-
3NA YP_005231334.1 295880-296794 915 - transcriptional regulator-
4NA YP_005231335.1 296899-298074 1176 + putative drug efflux protein-
5NA YP_005231336.1 298227-299006 780 + hypothetical protein-
6NA YP_005231337.1 299084-299854 771 + putative methyltransferase-
7NA YP_005231338.1 299910-301277 1368 - membrane-bound lytic murein transglycosylase D-
8NA YP_005231339.1 301349-302104 756 - hydroxyacylglutathione hydrolase-
9NA YP_005231340.1 302139-302861 723 + hypothetical protein-
10NA YP_005231341.1 302858-303325 468 - RNase H-
11NA YP_005231342.1 303389-304120 732 + DNA polymerase III epsilon subunit-
12tRNA-Asp - 304254-304327 74 + tRNA-Asp-
13NA YP_005231343.1 304651-305706 1056 - pathogenicity island protein-
14NA YP_005231344.1 305717-306712 996 - type VI secretion protein-
15NA YP_005231345.1 306709-308592 1884 - type VI system proteinVirulence
16NA YP_005231346.1 308608-309102 495 - putative type VI system cytoplasmic protein-
17NA YP_005231347.1 309099-309923 825 - putative type VI secretion system protein-
18NA YP_005231348.1 309910-310812 903 - hypothetical protein-
19NA YP_005231349.1 311180-313819 2640 + type VI system ATPaseVirulence
20NA YP_005231350.1 313919-314461 543 + putative type VI secretion system proteinVirulence
21NA YP_005231351.1 314485-315978 1494 + type VI system secreted proteinVirulence
22NA YP_005231352.1 316041-316151 111 + invasol-
23NA YP_005231353.1 316164-316610 447 + hypothetical protein-
24NA YP_005231354.1 316864-317349 486 + putative hemolysin-coregulated proteinVirulence
25NA YP_005231355.1 317654-318139 486 + hypothetical protein-
26NA YP_005231356.1 318124-318507 384 + hypothetical protein-
27NA YP_005231357.1 318650-319135 486 + putative hemolysin-coregulated proteinVirulence
28NA YP_005231358.1 319202-319738 537 + putative lipoprotein-
29NA YP_005231359.1 319742-321085 1344 + putative type VI secretion protein-
30NA YP_005231360.1 321082-322386 1305 + putative type VI system protein-
31NA YP_005231361.1 322391-323164 774 + putative inner membrane protein-
32NA YP_005231362.1 323355-323798 444 + putative shiga-like toxin A subunit-
33NA YP_005231363.1 323832-327701 3870 + type VI system protein-
34NA YP_005231364.1 327701-328489 789 + hypothetical protein-
35NA YP_005231365.1 328486-328902 417 + hypothetical protein-
36NA YP_005231366.1 328926-329447 522 + pathogenicity island protein-
37NA YP_005231367.1 329844-332033 2190 + putative type VI system protein-
38NA YP_005231368.1 332057-332503 447 + hypothetical protein-
39NA YP_005231369.1 332522-336616 4095 + putative Rhs family protein-


tRNA-Asp tRNA-Asp PI: Sal.6.NC_003198_P1-STY0288 STY0289 STY0290 STY0291 STY0292 STY0294 STY0297 STY0302 STY0302 STY0303 STY0304 STY0305 STY0306 STY0310 STY0316 STY0317 STY0319 STY0320 STY0321 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -

• PAIs homologous to this region

tcd island (Photorhabdus luminescens W14)
SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18)