PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli 042 (NC_017626)
Location : 233779 - 275861 bp
Size : 42083 bp
GC content : 50.6 %
GC bias (=GCregion - GCgenome) : 0.08 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 233779-233852 74 + tRNA-Asp-
2dkgB YP_006094533.1 234017-234820 804 + 2,5-diketo-D-gluconic acid reductase B-
3NA YP_006094534.1 234817-235731 915 - LysR family transcriptional regulator-
4NA YP_006094535.1 235972-236772 801 + hypothetical protein-
5NA YP_006094536.1 236849-237619 771 + putative methyltransferase-
6mltD YP_006094537.1 237667-239025 1359 - membrane-bound lytic murein transglycosylase D-
7gloB YP_006094538.1 239097-239852 756 - hydroxyacylglutathione hydrolase-
8NA YP_006094539.1 239883-240608 726 + hypothetical protein-
9rnhA YP_006094540.1 240605-241072 468 - ribonuclease HI-
10dnaQ YP_006094541.1 241128-241868 741 + DNA polymerase III subunit epsilon-
11tRNA-Asp - 242001-242074 74 + tRNA-Asp-
12NA YP_006094542.1 242404-243189 786 + putative lipoprotein-
13NA YP_006094543.1 243529-244008 480 - putative type VI secretion system protein-
14NA YP_006094544.1 244026-245384 1359 - putative type VI secretion system protein-
15NA YP_006094545.1 245395-248922 3528 - putative type VI secretion system protein-
16NA YP_006094546.1 248942-250384 1443 - putative type VI secretion system protein-
17NA YP_006094547.1 250389-251132 744 - putative type VI secretion system protein-
18NA YP_006094548.1 251129-253861 2733 - putative type VI secretion system proteinVirulence
19NA YP_006094549.1 253871-254644 774 - putative type VI secretion system protein-
20NA YP_006094550.1 254649-255995 1347 - putative type VI secretion system proteinVirulence
21NA YP_006094551.1 255998-256522 525 - putative type VI secretion system protein-
22NA YP_006094552.1 256519-257811 1293 - putative type VI secretion system protein-
23NA YP_006094553.1 257816-258865 1050 - putative type VI secretion system protein-
24NA YP_006094554.1 258829-260670 1842 - putative type VI secretion system proteinVirulence
25NA YP_006094555.1 260676-261101 426 - putative type VI secretion system protein-
26NA YP_006094556.1 261106-262590 1485 - putative type VI secretion system proteinVirulence
27NA YP_006094557.1 262613-263116 504 - putative type VI secretion system proteinVirulence
28NA YP_006094558.1 263819-264337 519 + putative type VI secretion system protein-
29NA YP_006094559.1 264423-264542 120 + hypothetical protein-
30NA - 264539-266172 1634 - --
31NA YP_006094560.1 264558-266516 1959 + Type VI secretion system Rhs/Vgr-family protein-
32NA YP_006094561.1 266516-267355 840 + putative type VI secretion system protein-
33NA YP_006094562.1 267377-268948 1572 + putative type VI secretion system protein-
34NA YP_006094563.1 269063-270025 963 + putative type VI secretion system protein-
35NA YP_006094564.1 270335-271294 960 + H repeat-associated protein-
36NA YP_006094565.1 271826-273076 1251 + putative reverse transcriptase-Group II intronVirulence
37NA YP_006094566.1 273523-274659 1137 + H repeat-associated protein-
38NA YP_006094567.1 274779-275282 504 + hypothetical protein-
39NA YP_006094568.1 275349-275861 513 + hypothetical protein-


tRNA-Asp tRNA-Asp NA