PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli 042 (NC_017626)
Location : 3429556 - 3495247 bp
Size : 65692 bp
GC content : 48.4 %
GC bias (=GCregion - GCgenome) : -2.16 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA YP_006097506.1 3429556-3430287 732 - hypothetical proteinVirulence
2NA YP_006097507.1 3430957-3431487 531 + putative DNA-binding protein-
3NA YP_006097508.1 3432650-3433873 1224 - hypothetical proteinVirulence
4NA YP_006097509.1 3433974-3434858 885 + putative ATP/GTP-binding proteinVirulence
5NA YP_006097510.1 3435061-3435741 681 + putative DNA-binding proteinVirulence
6NA YP_006097511.1 3435784-3436566 783 + hypothetical proteinVirulence
7NA YP_006097512.1 3436572-3436805 234 + hypothetical proteinVirulence
8NA YP_006097513.1 3436895-3437713 819 + hypothetical proteinVirulence
9NA YP_006097514.1 3437804-3438289 486 + putative antirestriction proteinVirulence
10NA - 3437857-3439501 1645 - --
11NA YP_006097515.1 3438290-3438781 492 + putative DNA repair proteinVirulence
12NA YP_006097516.1 3438844-3439065 222 + hypothetical proteinVirulence
13NA YP_006097517.1 3439145-3439522 378 + hypothetical proteinVirulence
14NA YP_006097518.1 3439569-3439946 378 + hypothetical proteinVirulence
15NA YP_006097519.1 3439943-3440431 489 + hypothetical proteinVirulence
16NA YP_006097520.1 3440443-3440640 198 + hypothetical proteinVirulence
17NA YP_006097521.1 3440725-3441567 843 + hypothetical proteinVirulence
18NA - 3441678-3441699 22 + --
19NA YP_006097522.1 3441805-3442095 291 - hypothetical protein-
20kpsF YP_006097523.1 3442891-3443874 984 + polysialic acid capsule expression proteinVirulence
21kpsE YP_006097524.1 3443946-3445094 1149 + capsule polysaccharide export proteinVirulence
22kpsD YP_006097525.1 3445115-3446794 1680 + polysialic acid transport proteinVirulence
23kpsU YP_006097526.1 3446804-3447544 741 + 3-deoxy-manno-octulosonate cytidylyltransferaseVirulence
24kpsC YP_006097527.1 3447541-3449568 2028 + capsule polysaccharide export proteinVirulence
25kpsS YP_006097528.1 3449603-3450850 1248 + capsule polysaccharide export proteinVirulence
26NA YP_006097529.1 3450959-3452419 1461 - putative capsule O-acetyl transferase-
27NA YP_006097530.1 3452780-3456118 3339 - putative capsular polysaccharide modification protein-
28NA YP_006097531.1 3456356-3457051 696 - putative capsular polysaccharide modification protein-
29kpsT YP_006097532.1 3457137-3457808 672 - polysialic acid transport ATP-binding proteinVirulence
30kpsM YP_006097533.1 3457805-3458581 777 - polysialic acid transport permease proteinVirulence
31NA YP_006097534.1 3459409-3459594 186 - hypothetical protein-
32gspM YP_006097535.1 3459637-3460173 537 - type II secretion system protein MVirulence
33gspL YP_006097536.1 3460175-3461353 1179 - type II secretion system protein LVirulence
34gspK YP_006097537.1 3461350-3462327 978 - type II secretion system protein KVirulence
35gspJ YP_006097538.1 3462324-3462893 570 - type II secretion system protein JVirulence
36gspI YP_006097539.1 3462926-3463297 372 - type II secretion system protein IVirulence
37gspH YP_006097540.1 3463294-3463857 564 - type II secretion system protein HVirulence
38gspG YP_006097541.1 3463861-3464316 456 - type II secretion system protein GVirulence
39gspF YP_006097542.1 3464333-3465556 1224 - type II secretion system protein FVirulence
40gspE YP_006097543.1 3465556-3467049 1494 - type II secretion system protein EVirulence
41gspD YP_006097544.1 3467049-3469109 2061 - type II secretion system protein DVirulence
42gspC YP_006097545.1 3469139-3470098 960 - type II secretion system protein CVirulence
43NA YP_006097546.1 3470116-3470526 411 - type II secretion system lipoprotein-
44pppA YP_006097547.1 3470592-3471401 810 - type II secretion system leader peptidase-
45acfD YP_006097548.1 3471541-3476112 4572 - accessory colonization factorVirulence
46NA YP_006097549.1 3476263-3476568 306 + hypothetical protein-
47glcA YP_006097550.1 3476596-3478278 1683 - glycolate permease-
48glcB YP_006097551.1 3478633-3480804 2172 - malate synthase G-
49glcG YP_006097552.1 3480826-3481230 405 - hypothetical protein-
50glcF YP_006097553.1 3481235-3482458 1224 - glycolate oxidase iron-sulfur subunit-
51glcE YP_006097554.1 3482469-3483521 1053 - glycolate oxidase subunit-
52glcD YP_006097555.1 3483521-3485020 1500 - glycolate oxidase subunit-
53glcC YP_006097556.1 3485271-3486035 765 + glc operon transcriptional activator-
54NA YP_006097557.1 3486042-3487184 1143 - hypothetical protein-
55NA YP_006097558.1 3487555-3489276 1722 + AMP-binding protein-
56NA YP_006097559.1 3489273-3490187 915 + hypothetical protein-
57NA YP_006097560.1 3490219-3490467 249 + putative acyl carrier protein-
58NA YP_006097561.1 3490467-3491639 1173 + putative aminotransferase-
59NA YP_006097562.1 3491674-3492753 1080 - putative permease-
60NA YP_006097563.1 3492750-3493820 1071 - putative permease-
61NA YP_006097564.1 3493851-3494411 561 - hypothetical protein-
62NA YP_006097565.1 3494423-3495247 825 - hypothetical protein-


NA NA