PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli ABU 83972 (NC_017631)
Location : 1220723 - 1245368 bp
Size : 24646 bp
GC content : 48.9 %
GC bias (=GCregion - GCgenome) : -1.7 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1sfaG YP_006105298.1 1220723-1221250 528 + S-fimbrial adhesin protein SfaGVirulence
2sfaS YP_006105299.1 1221272-1221775 504 + S-fimbrial adhesin protein SfaS precursorVirulence
3sfaH YP_006105300.1 1221768-1222736 969 + S-fimbrial adhesin protein SfaHVirulence
4NA YP_006105301.1 1223040-1223780 741 + hypothetical protein-
5sfaX YP_006105302.1 1223978-1224478 501 + HTH-type transcriptional regulator SfaXVirulence
6NA YP_006105303.1 1224804-1225841 1038 - putative transposase-
7iroN YP_006105304.1 1226071-1228248 2178 + TonB dependent outer membrane siderophore receptor IroNVirulence
8iroE YP_006105305.1 1228293-1229249 957 - IroE proteinVirulence
9iroD YP_006105306.1 1229334-1230563 1230 - ferric enterochelin esterase IroDVirulence
10iroC YP_006105307.1 1230667-1234326 3660 - ATP binding cassette ABC transporter IroCVirulence
11iroB YP_006105308.1 1234466-1235581 1116 - putative glucosyltransferaseVirulence
12NA YP_006105309.1 1236119-1236418 300 + hypothetical protein-
13NA YP_006105310.1 1236596-1237054 459 + transposase-
14NA YP_006105311.1 1237182-1237499 318 - transposase-
15NA YP_006105312.1 1237560-1237721 162 - hypothetical protein-
16NA YP_006105313.1 1238235-1238597 363 + membrane protein-
17tRNA-Arg - 1239061-1239137 77 + tRNA-Arg-
18NA YP_006105314.1 1239416-1239775 360 - putative transposase-
19NA YP_006105315.1 1239886-1240779 894 - hypothetical proteinVirulence
20NA YP_006105316.1 1241125-1243095 1971 + putative outer membrane heme/hemoglobin receptorVirulence
21NA YP_006105317.1 1243114-1243905 792 + hypothetical proteinVirulence
22NA YP_006105318.1 1244229-1245368 1140 + putative cobalamin synthesis proteinVirulence


tRNA-Arg