PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli ETEC H10407 (NC_017633)
Location : 3444844 - 3522022 bp
Size : 77179 bp
GC content : 51.8 %
GC bias (=GCregion - GCgenome) : 1.03 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA YP_006116734.1 3444844-3445131 288 + PTS system transporter subunit IIBVirulence
2join - 3445162-3448359 3198 + --
3NA YP_006116735.1 3445677-3446459 783 - insertion sequence IS100, ATP-binding protein-
4NA YP_006116736.1 3446456-3447478 1023 - transposase for insertion sequence IS100-
5NA YP_006116737.1 3448575-3448796 222 - putative transposase-
6NA YP_006116738.1 3449281-3450294 1014 - hypothetical protein-
7NA YP_006116739.1 3450306-3451622 1317 - major facilitator superfamily protein-
8NA YP_006116740.1 3451650-3452570 921 - putative sugar kinase-
9NA YP_006116741.1 3452873-3453655 783 + DeoR-family transcriptional regulator-
10NA YP_006116742.1 3454658-3455092 435 - hypothetical proteinVirulence
11NA YP_006116743.1 3455080-3455487 408 - hypothetical proteinVirulence
12NA YP_006116744.1 3455741-3456310 570 - hypothetical proteinVirulence
13NA YP_006116745.1 3456577-3457224 648 + transposase-
14NA YP_006116746.1 3457591-3459162 1572 + transposase-
15NA YP_006116747.1 3459355-3460563 1209 + transposase-
16NA YP_006116748.1 3461844-3462104 261 + hypothetical proteinVirulence
17NA YP_006116749.1 3462198-3462800 603 + hypothetical proteinVirulence
18NA YP_006116750.1 3464731-3465888 1158 + hypothetical protein-
19NA YP_006116751.1 3465953-3466189 237 + hypothetical protein-
20NA YP_006116752.1 3466267-3467838 1572 - transposase-
21NA YP_006116753.1 3468205-3468882 678 - transposase-
22NA - 3469165-3469974 810 + --
23NA YP_006116754.1 3470092-3470829 738 - hypothetical protein-
24NA YP_006116755.1 3471001-3472047 1047 + putative GTP-binding proteinVirulence
25join - 3472419-3477991 5573 + --
26NA YP_006116756.1 3474404-3475942 1539 - transposase-
27NA YP_006116757.1 3476336-3476737 402 - putative transposase-
28NA YP_006116758.1 3478112-3480628 2517 + integral membrane proteinVirulence
29NA YP_006116759.1 3480704-3481159 456 + hypothetical proteinVirulence
30NA YP_006116760.1 3481238-3481471 234 + hypothetical proteinVirulence
31NA YP_006116761.1 3481571-3482389 819 + hypothetical proteinVirulence
32NA YP_006116762.1 3482471-3482950 480 + putative antirestriction proteinVirulence
33yeeS YP_006116763.1 3482962-3483438 477 + putative RadC DNA repair proteinVirulence
34NA YP_006116764.1 3483885-3484253 369 + hypothetical proteinVirulence
35NA YP_006116765.1 3484343-3484717 375 + hypothetical proteinVirulence
36NA YP_006116766.1 3484714-3485202 489 + hypothetical proteinVirulence
37NA YP_006116767.1 3485214-3485411 198 + hypothetical proteinVirulence
38NA YP_006116768.1 3485508-3486077 570 + hypothetical protein-
39NA YP_006116769.1 3486358-3486894 537 - type II secretion system protein MVirulence
40NA YP_006116770.1 3486896-3488074 1179 - type II secretion system protein LVirulence
41NA YP_006116771.1 3488071-3489009 939 - type II secretion system protein KVirulence
42NA YP_006116772.1 3489051-3489650 600 - type II secretion system protein JVirulence
43NA YP_006116773.1 3489647-3490018 372 - type II secretion system protein IVirulence
44NA YP_006116774.1 3490015-3490578 564 - type II secretion system protein HVirulence
45NA YP_006116775.1 3490582-3491037 456 - type II secretion system protein GVirulence
46NA YP_006116776.1 3491054-3492277 1224 - type II secretion system protein FVirulence
47NA YP_006116777.1 3492277-3493770 1494 - type II secretion system protein EVirulence
48NA YP_006116778.1 3493770-3495830 2061 - type II secretion system protein DVirulence
49NA YP_006116779.1 3495860-3496690 831 - type II secretion system protein CVirulence
50NA YP_006116780.1 3496837-3497247 411 - type II secretion system lipoprotein-
51NA YP_006116781.1 3497313-3498122 810 - type II secretion system leader peptidaseVirulence
52NA YP_006116782.1 3498320-3502879 4560 - accessory colonization factorVirulence
53NA YP_006116783.1 3503364-3505046 1683 - glycolate permease-
54NA YP_006116784.1 3505401-3507572 2172 - malate synthase G-
55NA YP_006116785.1 3507594-3507998 405 - hypothetical protein-
56NA YP_006116786.1 3508003-3509226 1224 - glycolate oxidase iron-sulfur subunit-
57NA YP_006116787.1 3509237-3510289 1053 - glycolate oxidase subunit-
58NA YP_006116788.1 3510289-3511788 1500 - glycolate oxidase subunit-
59NA YP_006116789.1 3512039-3512803 765 + glc operon transcriptional activator-
60NA YP_006116790.1 3512810-3513991 1182 - hypothetical protein-
61NA YP_006116791.1 3514429-3516051 1623 + AMP-binding protein-
62NA YP_006116792.1 3516048-3516962 915 + hypothetical protein-
63NA YP_006116793.1 3516994-3517242 249 + hypothetical protein-
64NA YP_006116794.1 3517242-3518414 1173 + putative aminotransferase-
65NA YP_006116795.1 3518449-3519609 1161 - putative permease-
66NA YP_006116796.1 3519525-3520595 1071 - putative permease-
67NA YP_006116797.1 3520626-3521186 561 - hypothetical protein-
68NA YP_006116798.1 3521198-3522022 825 - hypothetical protein-