PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli W (NC_017635)
Location : 229399 - 263882 bp
Size : 34484 bp
GC content : 51.8 %
GC bias (=GCregion - GCgenome) : 0.92 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 229399-229475 77 + tRNA-Asp-
2dkgB YP_006122989.1 229638-230441 804 + 2,5-diketo-D-gluconate reductase B-
3yafC YP_006122990.1 230438-231352 915 - DNA-binding transcriptional regulator-
4yafD YP_006122991.1 231614-232393 780 + hypothetical protein-
5yafE YP_006122992.1 232471-233241 771 + S-adenosyl-L-methionine-dependent methyltransferase-
6mltD YP_006122993.1 233289-234509 1221 - membrane-bound lytic murein transglycosylase D-
7gloB YP_006122994.1 234719-235474 756 - hydroxyacylglutathione hydrolase-
8yafS YP_006122995.1 235508-236230 723 + putative S-adenosyl-L-methionine-dependent methyltransferase-
9rnhA YP_006122996.1 236227-236694 468 - ribonuclease HI, degrades RNA of DNA-RNA hybrids-
10dnaQ YP_006122997.1 236750-237490 741 + DNA polymerase III subunit epsilon-
11tRNA-Asp - 237623-237699 77 + tRNA-Asp-
12yafT YP_006122998.1 238030-238815 786 + aminopeptidase-
13ykfM YP_006122999.1 238952-239431 480 - hypothetical protein-
14yafU YP_006123000.1 239441-240355 915 - inner membrane protein-
15etsH2 YP_006123001.1 240399-240881 483 - Hcp-related protein-
16etsA2 YP_006123002.1 240905-242257 1353 - T6SS-associated protein-
17etsI YP_006123003.1 242268-245792 3525 - IcmF-like protein-
18etsA YP_006123004.1 245811-247223 1413 - ImpA domain-containing protein-
19etsX YP_006123005.1 247228-247971 744 - T6SS-associated protein-
20etsV YP_006123006.1 247968-250775 2808 - ClpV ATPase-
21etsU YP_006123007.1 250784-251545 762 - T6SS-associated protein-
22etsM YP_006123008.1 251550-252881 1332 - T6SS-associated proteinVirulence
23etsN YP_006123009.1 252884-253408 525 - OM lipoprotein-
24etsH YP_006123010.1 253405-254685 1281 - forkhead-associated protein-
25etsR YP_006123011.1 254710-255792 1083 - T6SS-associated proteinVirulence
26etsC YP_006123012.1 255756-257606 1851 - T6SS-associated proteinVirulence
27etsD YP_006123013.1 257610-258023 414 - T6SS-associated protein-
28etsB YP_006123014.1 258030-259505 1476 - T6SS-associated proteinVirulence
29NA YP_006123015.1 259556-259780 225 - hypothetical protein-
30etsS YP_006123016.1 259815-260315 501 - T6SS-associated proteinVirulence
31etsH1 YP_006123017.1 261013-261531 519 + Hcp-related protein-
32etsG YP_006123018.1 261741-263882 2142 + protein VgrG-


tRNA-Asp tRNA-Asp PI: Esc.17aec32 aec31 aec30 aec29 aec27 aec26 aec25 aec24 aec23 aec22 aec19 aec18 aec17 aec16 aec15 PI: Esc.G2.NC_008563_P1APECO1_t03yafT aec32 aec31 aec30 aec29 aec28 aec27 aec26 aec25 aec24 aec23 aec22 APECO1_1761 aec19 aec18 aec17 aec16 aec15 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -orf23

• PAIs homologous to this region

AGI-1 (Escherichia coli BEN2908)
PAI II APEC-O1 (Escherichia coli APEC O1)
tcd island (Photorhabdus luminescens W14)