PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli W (NC_017664)
Location : 229399 - 263882 bp
Size : 34484 bp
GC content : 51.8 %
GC bias (=GCregion - GCgenome) : 0.91 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 229399-229475 77 + tRNA-Asp-
2dkgB YP_006171651.1 229638-230441 804 + 2,5-diketo-D-gluconate reductase B-
3yafC YP_006171652.1 230438-231352 915 - LysR family transcriptional regulator-
4NA YP_006171653.1 231593-232393 801 + hypothetical protein-
5yafE YP_006171654.1 232471-233241 771 + putative biotin synthesis protein-
6mltD YP_006171655.1 233289-234509 1221 - membrane-bound lytic murein transglycosylase D-
7gloB YP_006171656.1 234719-235474 756 - hydroxyacylglutathione hydrolase-
8yafS YP_006171657.1 235508-236230 723 + putative S-adenosyl-L-methionine-dependent methyltransferase-
9rnhA YP_006171658.1 236227-236694 468 - ribonuclease H-
10dnaQ YP_006171659.1 236750-237490 741 + DNA polymerase III subunit epsilon-
11tRNA-Asp - 237623-237699 77 + tRNA-Asp-
12yafT YP_006171660.1 238030-238815 786 + putative aminopeptidase-
13NA YP_006171661.1 238952-239431 480 - hypothetical protein-
14NA YP_006171662.1 239441-240355 915 - hypothetical protein-
15NA YP_006171663.1 240399-240881 483 - Hcp-like protein-
16NA YP_006171664.1 240905-242257 1353 - hypothetical protein-
17NA YP_006171665.1 242268-245732 3465 - IcmF-like protein-
18NA YP_006171666.1 245811-247223 1413 - hypothetical protein-
19NA YP_006171667.1 247228-247971 744 - hypothetical protein-
20NA YP_006171668.1 247968-250775 2808 - putative ATP-dependent Clp proteinase Aec27 ATP-binding chain, with chaperone activity-
21NA YP_006171669.1 250784-251545 762 - putative membrane protein Aec26-
22NA YP_006171670.1 251550-252881 1332 - hypothetical proteinVirulence
23NA YP_006171671.1 252884-253408 525 - putative lipoprotein-
24NA YP_006171672.1 253405-254685 1281 - type VI secretion system protein ImpI-
25NA YP_006171673.1 254710-255792 1083 - hypothetical proteinVirulence
26NA YP_006171674.1 255756-257606 1851 - type VI secretion system protein ImpGVirulence
27NA YP_006171675.1 257610-258023 414 - hypothetical protein-
28NA YP_006171676.1 258030-259505 1476 - hypothetical proteinVirulence
29NA YP_006171677.1 259556-259780 225 - hypothetical protein-
30NA YP_006171678.1 259815-260315 501 - hypothetical proteinVirulence
31NA YP_006171679.1 260743-260886 144 + hypothetical protein-
32NA YP_006171680.1 261013-261531 519 + hypothetical protein-
33NA YP_006171681.1 261741-263882 2142 + VgrG protein-


tRNA-Asp tRNA-Asp PI: Esc.17aec32 aec31 aec30 aec29 aec27 aec26 aec25 aec24 aec23 aec22 aec19 aec18 aec17 aec16 aec15 PI: Esc.G2.NC_008563_P1APECO1_t03yafT aec32 aec31 aec30 aec29 aec28 aec27 aec26 aec25 aec24 aec23 aec22 APECO1_1761 aec19 aec18 aec17 aec16 aec15 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -orf23

• PAIs homologous to this region

AGI-1 (Escherichia coli BEN2908)
PAI II APEC-O1 (Escherichia coli APEC O1)
tcd island (Photorhabdus luminescens W14)