PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Escherichia coli 2009EL-2071 (NC_018661)
Location : 4223232 - 4257664 bp
Size : 34433 bp
GC content : 51.7 %
GC bias (=GCregion - GCgenome) : 1 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA YP_006785870.1 4223232-4225373 2142 - hypothetical protein-
2NA YP_006785871.1 4225583-4226101 519 - hypothetical protein-
3NA YP_006785872.1 4226228-4226371 144 - hypothetical protein-
4NA YP_006785873.1 4226798-4227298 501 + hypothetical proteinVirulence
5NA YP_006785874.1 4227333-4227557 225 + hypothetical protein-
6NA YP_006785875.1 4227608-4229083 1476 + hypothetical proteinVirulence
7NA YP_006785876.1 4229090-4229503 414 + hypothetical protein-
8NA YP_006785877.1 4229507-4231357 1851 + type VI secretion system protein ImpGVirulence
9NA YP_006785878.1 4231321-4232403 1083 + hypothetical proteinVirulence
10NA YP_006785879.1 4232428-4233708 1281 + type VI secretion system protein ImpI-
11NA YP_006785880.1 4233705-4234229 525 + lipoprotein-
12NA YP_006785881.1 4234232-4235563 1332 + hypothetical proteinVirulence
13NA YP_006785882.1 4235568-4236329 762 + membrane protein Aec26-
14NA YP_006785883.1 4236338-4239097 2760 + ATP-dependent Clp proteinase ATP-binding subunitVirulence
15NA YP_006785884.1 4239094-4239837 744 + hypothetical protein-
16NA YP_006785885.1 4239842-4241257 1416 + hypothetical protein-
17NA YP_006785886.1 4241276-4244800 3525 + IcmF-like protein-
18NA YP_006785887.1 4244811-4246163 1353 + hypothetical protein-
19NA YP_006785888.1 4246187-4246669 483 + hypothetical protein-
20NA YP_006785889.1 4246713-4247627 915 + hypothetical protein-
21NA YP_006785890.1 4247637-4248116 480 + hypothetical protein-
22NA YP_006785891.1 4248253-4249038 786 - aminopeptidase-
23tRNA-Asp - 4249365-4249441 77 - tRNA-Asp-
24NA YP_006785892.1 4249574-4250305 732 - DNA polymerase III subunit epsilon-
25rnhA YP_006785893.1 4250370-4250837 468 + ribonuclease H-
26NA YP_006785894.1 4250834-4251556 723 - S-adenosyl-L-methionine-dependent methyltransferase-
27NA YP_006785895.1 4251590-4252345 756 + hydroxyacylglutathione hydrolase-
28mltD YP_006785896.1 4252417-4253775 1359 + membrane-bound lytic murein transglycosylase D-
29NA YP_006785897.1 4253823-4254593 771 - S-adenosyl-L-methionine-dependent methyltransferase-
30NA YP_006785898.1 4254671-4255471 801 - hypothetical protein-
31NA YP_006785899.1 4255712-4256626 915 + LysR family transcriptional regulator-
32dkgB YP_006785900.1 4256623-4257426 804 - 2,5-diketo-D-gluconate reductase B-
33tRNA-Asp - 4257588-4257664 77 - tRNA-Asp-


tRNA-Asp tRNA-Asp PI: Esc.17aec15 aec16 aec17 aec18 aec19 aec22 aec23 aec24 aec25 aec26 aec27 aec29 aec30 aec31 aec32 PI: Esc.G2.NC_008563_P1aec15 aec16 aec17 aec18 aec19 APECO1_1761 aec22 aec23 aec24 aec25 aec26 aec27 aec28 aec29 aec30 aec31 aec32 yafT APECO1_t03PI: Pho.1orf23 -dnaQ rnhA orf71 gloB mltD -

• PAIs homologous to this region

AGI-1 (Escherichia coli BEN2908)
PAI II APEC-O1 (Escherichia coli APEC O1)
tcd island (Photorhabdus luminescens W14)