PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Salmonella enterica U288 (NC_021151)
Location : 2752455 - 2794272 bp
Size : 41818 bp
GC content : 54.4 %
GC bias (=GCregion - GCgenome) : 2.19 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1NA YP_007903751.1 2752455-2756549 4095 - putative RHS-like protein-
2NA YP_007903752.1 2756568-2757014 447 - hypothetical protein-
3NA YP_007903753.1 2757038-2759227 2190 - putative cytoplasmic protein-
4NA YP_007903754.1 2759624-2760142 519 - SPI-6 associated protein-
5NA YP_007903755.1 2760169-2760585 417 - hypothetical protein-
6NA YP_007903756.1 2760582-2761370 789 - putative cytoplasmic protein-
7NA YP_007903757.1 2761370-2765239 3870 - putative inner membrane protein-
8NA YP_007903758.1 2765273-2765629 357 - putative shiga-like toxin A subunit-
9NA YP_007903759.1 2765907-2766680 774 - membrane protein, virulence associated protein-
10NA YP_007903760.1 2766685-2767989 1305 - hypothetical protein-
11NA YP_007903761.1 2767986-2769329 1344 - type VI secretion protein-
12NA YP_007903762.1 2769333-2769869 537 - putative outer membrane lipoprotein-
13NA YP_007903763.1 2769936-2770421 486 - Protein hcp1Virulence
14NA YP_007903764.1 2770564-2770935 372 - putative periplasmic protein-
15NA YP_007903765.1 2770932-2771417 486 - putative cytoplasmic protein-
16NA YP_007903766.1 2771547-2771654 108 - lipoprotein-
17NA YP_007903767.1 2771722-2772207 486 - Protein hcp1Virulence
18NA YP_007903768.1 2773093-2774601 1509 - SciI proteinVirulence
19NA YP_007903769.1 2774625-2775167 543 - SPI-6 associated proteinVirulence
20NA YP_007903770.1 2775267-2777906 2640 - SPI-6 associated proteinVirulence
21NA YP_007903771.1 2778274-2779176 903 + SPI-6 associated protein-
22NA YP_007903772.1 2779163-2779987 825 + SciE protein-
23NA YP_007903773.1 2779984-2780478 495 + hypothetical protein-
24NA YP_007903774.1 2780494-2782377 1884 + hypothetical proteinVirulence
25NA YP_007903775.1 2782374-2783369 996 + SPI-6 associated protein-
26NA YP_007903776.1 2783380-2784435 1056 + putative cytoplasmic protein-
27NA YP_007903777.1 2784526-2784633 108 - hypothetical protein-
28tRNA-Asp - 2784757-2784833 77 - tRNA-Asp-
29NA YP_007903778.1 2784967-2785698 732 - DNA polymerase III subunit epsilon-
30rnhA YP_007903779.1 2785762-2786229 468 + ribonuclease H-
31NA YP_007903780.1 2786226-2786948 723 - hypothetical protein-
32NA YP_007903781.1 2786983-2787738 756 + hydroxyacylglutathione hydrolase-
33mltD YP_007903782.1 2787810-2789177 1368 + membrane-bound lytic murein transglycosylase D-
34NA YP_007903783.1 2789233-2790003 771 - putative methyltransferase-
35NA YP_007903784.1 2790081-2790881 801 - hypothetical protein-
36NA YP_007903785.1 2791013-2792188 1176 - inner membrane transport protein YdhP-
37NA YP_007903786.1 2792293-2793207 915 + LysR family transcriptional regulator-
38dkgB YP_007903787.1 2793228-2794031 804 - 2,5-diketo-D-gluconate reductase B-
39tRNA-Asp - 2794196-2794272 77 - tRNA-Asp-


tRNA-Asp tRNA-Asp PI: Sal.6.NC_003198_P1STY0321 STY0320 STY0319 STY0317 STY0316 STY0310 STY0306 STY0305 STY0304 STY0303 STY0302 STY0302 STY0297 STY0294 STY0292 STY0291 STY0290 STY0289 STY0288 -PI: Pho.1-dnaQ rnhA orf71 gloB mltD -

• PAIs homologous to this region

tcd island (Photorhabdus luminescens W14)
SPI-6 (Salmonella enterica subsp. enterica serovar Typhi CT18)