PAI-like Region

• General information

Type: Candidate PAI (PAI-like region overlapping GI(s))
Strain : Salmonella enterica 3114 (NC_022241)
Location : 290290 - 303601 bp
Size : 13312 bp
GC content : 51.9 %
GC bias (=GCregion - GCgenome) : -0.27 %


• Features

*Putative virulence or resistance of a gene was inferred from the result of BLAST search against PAI or REI genes.
  Virulence : homologous to virulence gene(s) encoded in the PAIs
  Resistance : homologous to resistance gene(s) encoded in the REIs
  - : not homologous to any gene encoded in the PAIs

No Name GenBank Accn Location Size(bp) Strand Product Putative Virulence / Resistance*
1tRNA-Asp - 290290-290366 77 + tRNA-Asp-
2SBOV02191 YP_008504113.1 290531-291334 804 + 2,5-diketo-D-gluconate reductase B-
3SBOV02201 YP_008504114.1 291355-292269 915 - LysR substrate binding domain protein-
4SBOV02211 YP_008504115.1 292374-293549 1176 + inner membrane transport protein YdhP-
5SBOV02221 YP_008504116.1 293701-294480 780 + Hypothetical protein yafD-
6SBOV02231 YP_008504117.1 294558-295328 771 + methyltransferase, UbiE/COQ5 family-
7SBOV02241 YP_008504118.1 295384-296604 1221 - membrane-bound lytic murein transglycosylase D-
8SBOV02251 YP_008504119.1 296823-297578 756 - probable hydroxyacylglutathione hydrolase-
9SBOV02261 YP_008504120.1 297613-298335 723 + conserved hypothetical protein-
10SBOV02271 YP_008504121.1 298332-298799 468 - ribonuclease H-
11SBOV02281 YP_008504122.1 298854-299594 741 + DNA polymerase III epsilon subunit-
12tRNA-Asp - 299728-299804 77 + tRNA-Asp-
13SBOV02291 YP_008504123.1 299944-300789 846 - hypothetical proteinVirulence
14SBOV02301 YP_008504124.1 300867-301061 195 - hypothetical proteinVirulence
15SBOV02311 YP_008504125.1 301087-301578 492 - hypothetical proteinVirulence
16SBOV02321 YP_008504126.1 301575-301952 378 - hypothetical proteinVirulence
17SBOV02331 YP_008504127.1 302011-302655 645 - hypothetical protein-
18SBOV02341 YP_008504128.1 302652-303023 372 - hypothetical proteinVirulence
19SBOV02351 YP_008504129.1 303024-303362 339 - hypothetical protein-
20SBOV02361 YP_008504130.1 303380-303601 222 - hypothetical proteinVirulence


tRNA-Asp tRNA-Asp PI: Esc.18aec79 aec77 aec76 aec75 aec74 PI: Esc.13.NC_013353_P1ECO103_3595 ECO103_3594 ECO103_3593 ECO103_3592 ECO103_3591 ECO103_3590 PI: Esc.13.4- - - - - PI: Esc.13.5- - - yeeW - - - - PI: Esc.1z1226 z1225 z5092 z5091 yeeT PI: Esc.12.NC_008563_P4APECO1_3484 APECO1_3485 yeeV yeeU PI: Esc.12ORF_49 yeeW yeeV yeeU yeeT PI: Esc.2- - - yeeU yeeT PI: Esc.7.NC_004431_P2c5147 c5148 c5149 c5150 c5151 PI: Esc.7- - - - - PI: Esc.3- - - - - - PI: Esc.5- - yeeW yeeV yeeU yeeT PI: Esc.8.1- yeeW yeeV yeeU yeeT PI: Shi.1.NC_004741_P1S3207 yeeW yeeV yeeU yeeT PI: Shi.1.NC_004337_P1SF3002 SF3001 yeeW yeeV yeeU yeeT PI: Shi.1.1- - - - - - PI: Shi.5- - - - - PI: Esc.24.NC_002655_P2Z1664 Z1663 Z1662 Z1658 PI: Esc.24.NC_002655_P1Z1226 Z1225 Z1223 Z1220 Z1218 PI: Pho.1-mltD gloB orf71 rnhA dnaQ -

• PAIs homologous to this region

PAI I 536 (Escherichia coli 536)
PAI I APEC-O1 (Escherichia coli APEC O1)
PAI I APEC-O1 (Escherichia coli APEC O1)
LEE (Escherichia coli 84/110-1)
LEE (Escherichia coli RW1374)
LEE (Escherichia coli 12009)
AGI-3 (Escherichia coli BEN2908)
PAI II 536 (Escherichia coli 536)
TAI (Escherichia coli O157:H7 EDL933)
TAI (Escherichia coli O157:H7 EDL933)
PAI III 536 (Escherichia coli 536)
PAI V 536 (Escherichia coli 536)
PAI II CFT073 (Escherichia coli CFT073)
PAI II CFT073 (Escherichia coli CFT073)
PAI-I AL862 (Escherichia coli AL862)
tcd island (Photorhabdus luminescens W14)
SHI-1 (Shigella flexneri YSH6000T)
SHI-1 (Shigella flexneri 2a str. 301)
SHI-1 (Shigella flexneri 2a str. 2457T)
SRL (Shigella flexneri YSH6000)