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Name : rpoB (CT315) Accession : NP_219820.1 Strain : Chlamydia trachomatis D/UW-3/CX Genome accession: NC_000117 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 354702 - 358460 bp Length : 3759 bp Strand : - Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGTTCAAGTGCCCGGAGCGGGTCAGCATCAAAAAGAAAGAAGATATTTTAGATCTTCCTAATCTTGTCGAAGTTCAAAT CAAGTCGTATAAGCAGTTTCTTCAAATCGGGAAGCTTGCTGAAGAGCGAGAAAACATTGGTTTAGAAGAAGTCTTCAGAG AAATTTTCCCTATCAAGTCTTATAATGAAGCTACGATTTTAGAGTACCTCTCTTATAACTTAGGAGTGCCCAAATACTCC CCAGAAGAGTGTATTCGTCGGGGAATCACCTATAGTGTTACTTTAAAGGTTCGTTTCCGTTTAACTGATGAAACGGGGAT TAAAGAAGAAGAAGTCTATATGGGAACCATCCCCATCATGACTGATAAGGGAACCTTTATTATTAATGGGGCAGAGAGAG TCGTTGTTTCTCAAGTCCACCGTTCTCCAGGAATCAATTTTGAACAAGAAAAACATTCTAAAGGAAATGTTTTATTTTCT TTTAGAATTATTCCTTATCGAGGAAGTTGGTTAGAAGCTGTCTTCGACATTAATGACCTTATCTATATCCATATTGATAG GAAAAAACGTCGCAGAAAGATTTTAGCTATGACGTTTATCCGAGCTTTAGGATATTCAACAGATGCAGATATTATTGAAG AGTTCTTTTCTGTAGAGGAGCGTTCCTTACGTTTAGAGAAGGATTTTGTCGCGTTAGTTGGTAAAGTTTTAGCTGATAAC GTAGTTGATGCGGATTCTTCATTAGTTTACGGGAAAGCTGGAGAGAAGCTAAGTACTGCTATGCTAAAACGCATCTTAGA TGCGGGAGTCCAATCTTTGAAGATTGCTGTTGGCGCAGATGAAAATCACCCAATTATTAAGATGCTCGCAAAAGATCCTA CGGATTCTTACGAAGCTGCTCTTAAAGATTTTTATCGCAGATTACGACCAGGAGAGCCTGCAACTTTAGTTAATGCTCGA TCCACAATTATGCGCTTATTCTTCGATGCTAAACGCTATAATTTAGGCCGCGTTGGACGTTATAAATTAAATAAAAAATT AGGATTCCCATTAGACGACGAAACATTATCTCAAGTGACTTTGAGAAAAGAAGATGTTATCGGCGCGTTGAAATATTTGA TTCGTTTGCGAATGGGCGATGAGAAGACATCTATCGATGATATTGACCATTTGGCAAACCGACGAGTTCGCTCTGTTGGA GAACTAATTCAGAATCACTGTCGTTCTGGATTGGCTAGAATGGAAAAGATCGTTCGAGAAAGAATGAATCTCTTTGATTT CTCTTCTGATACCCTAACTCCAGGAAAGATTATTTCTGCTAAAGGGTTAGTCAGTGTCCTGAAAGATTTCTTCAGCCGTT CTCAATTATCTCAGTTTATGGATCAGACAAACCCTGTCGCAGAATTGACGCACAAGCGTCGTCTGTCAGCATTAGGACCT GGGGGATTGAATAGAGAAAGAGCTGGGTTTGAAGTTCGAGACGTTCACGCAAGCCACTATGGTAGAATTTGTCCAATTGA GACTCCTGAAGGACCAAACATTGGGTTGATTACTTCACTGTCTTCCTTTGCTAAGATCAATGAATTTGGATTCATAGAGA CTCCTTATCGTGTCGTGCGCGATGGCATCGTGACAGATGAAATTGAGTATATGACAGCAGATGTTGAAGAAGAGTGTGTC ATTGCTCAGGCTTCTGCGGAGCTCGATGAGTATGATATGTTTAAAACTCCCGTATGCTGGGCTAGATACAAAGGAGAGGC TTTTGAAGCCGACACAAGTACGGTTACGCATATGGACGTTTCTCCAAAACAGCTGGTATCTGTGGTTACGGGGCTGATTC CTTTCTTGGAACACGACGATGCTAACCGAGCTCTTATGGGATCGAACATGCAACGGCAGGCTGTACCATTATTGAAAACG GAAGCTGCTATTGTTGGAACTGGATTAGAAGGGCGTGCTGCCAAAGATTCTGGAGCTATTATTGTGGCTCAGGAAGATGG GGTAGTCGAATACGTAGATAGCTATGAGATTGTCGTAGCGAAGAAGAATAATCCAACGCTTAAGGATCGTTATCAGCTTA AAAAATTCTTAAGATCCAACTCCGGAACATGCATCAACCAAACTCCTTTGTGTTCTGTGGGAGATGTGGTTACGCATGGA GATGTTTTAGCGGATGGCCCAGCAACCGATAAAGGGGAATTGGCTCTTGGTAAAAACGTATTAGTAGCCTTCATGCCTTG GTACGGGTATAACTTCGAAGATGCGATTATCATCTCCGAGAGGTTGATTAAACAAGATGCGTACACTTCTATTTACATAG AAGAATTTGAGTTAACAGCTCGAGATACAAAACTCGGTAAAGAAGAAATTACTAGAGATATTCCTAACGTTTCTGAAGAG GTTTTGGCAAATCTCGGAGAGGATGGTGTCGTCCGTATTGGGGCTGAAGTCAAGCCGGGAGATATTCTTGTCGGTAAAAT CACTCCGAAATCTGAGACGGAACTAGCTCCTGAAGAGCGTTTGTTGCGAGCTATTTTTGGAGAGAAGGCGGCGGACGTAA AAGATGCCTCTCTAACGGTTCCTCCTGGTACAGAAGGAGTCGTAATGGATGTCAAAGTATTCAGCAGAAAGGATCGCTTG TCCAAGAGCGATGATGAACTGGTTGAAGAAGCTGTGCATCTTAAGGATCTACAGAAAGAATATAAGAGTCAGTTAGCTCA ATTGAAAGTAGAACATAGAGAGAAACTGGGGGCTCTATTGCTCAATGAAAAAGCTCCTGCAGCGATTATACACCGTCGTT CGGCAGATATTTTGGTTCAAGAAGGTGCTATTTTTGATCAAGAGACTATCGAACTCTTAGAAAGAGAGTCGCTAGTTGAT TTGCTGATGGCTCCTTGTGACATGTATGATGTTTTGAAAGATATTCTTTCTAGCTATGAAACAGCTGTTCAGCGTTTGGA AGTCAATTATAAAACCGAAGCTGAGCACATAAAAGAAGGTGATGCTGACTTAGATCATGGAGTTATCCGACAAGTTAAAG TTTACGTGGCTTCCAAGCGAAAACTTCAAGTTGGGGATAAAATGGCTGGACGTCACGGAAACAAGGGAGTGGTTTCCAAG ATTGTTCCAGAAGCAGACATGCCTTTCTTAGCTAACGGTGAAACAGTACAGATGATTTTGAACCCGTTAGGGGTGCCTTC TCGAATGAACCTTGGACAGGTTTTAGAGACACATTTAGGATATGCTGCAAAAACTGCAGGTATCTATGTGAAAACTCCGG TCTTTGAAGGGTTCCCAGAGTCTCGTATTTGGGATATGATGATAGAGCAGGGATTGCCCGAAGATGGTAAGTCTTACCTA TTTGATGGTAAAACCGGAGAGCGTTTCGATAGCAAAGTGGTCGTTGGATACATCTACATGTTGAAATTGAGTCACTTAAT TGCTGATAAGATCCACGCTCGTTCTATAGGACCTTACTCTCTCGTTACGCAGCAACCTCTTGGAGGTAAAGCGCAGATGG GAGGACAGAGATTCGGGGAAATGGAGGTATGGGCTTTAGAGGCGTATGGGGTAGCTCATATGTTACAAGAGATTCTGACT GTTAAGTCCGACGATGTTTCGGGAAGAACTCGTATCTACGAATCAATCGTGAAAGGAGAAAACTTACTTCGTTCTGGAAC GCCTGAGTCGTTCAACGTTTTGATTAAAGAAATGCAAGGTCTAGGGCTTGATGTTCGCCCTATGGTAGTAGATGCTTAA Protein sequence : MFKCPERVSIKKKEDILDLPNLVEVQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEATILEYLSYNLGVPKYS PEECIRRGITYSVTLKVRFRLTDETGIKEEEVYMGTIPIMTDKGTFIINGAERVVVSQVHRSPGINFEQEKHSKGNVLFS FRIIPYRGSWLEAVFDINDLIYIHIDRKKRRRKILAMTFIRALGYSTDADIIEEFFSVEERSLRLEKDFVALVGKVLADN VVDADSSLVYGKAGEKLSTAMLKRILDAGVQSLKIAVGADENHPIIKMLAKDPTDSYEAALKDFYRRLRPGEPATLVNAR STIMRLFFDAKRYNLGRVGRYKLNKKLGFPLDDETLSQVTLRKEDVIGALKYLIRLRMGDEKTSIDDIDHLANRRVRSVG ELIQNHCRSGLARMEKIVRERMNLFDFSSDTLTPGKIISAKGLVSVLKDFFSRSQLSQFMDQTNPVAELTHKRRLSALGP GGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRVVRDGIVTDEIEYMTADVEEECV IAQASAELDEYDMFKTPVCWARYKGEAFEADTSTVTHMDVSPKQLVSVVTGLIPFLEHDDANRALMGSNMQRQAVPLLKT EAAIVGTGLEGRAAKDSGAIIVAQEDGVVEYVDSYEIVVAKKNNPTLKDRYQLKKFLRSNSGTCINQTPLCSVGDVVTHG DVLADGPATDKGELALGKNVLVAFMPWYGYNFEDAIIISERLIKQDAYTSIYIEEFELTARDTKLGKEEITRDIPNVSEE VLANLGEDGVVRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRL SKSDDELVEEAVHLKDLQKEYKSQLAQLKVEHREKLGALLLNEKAPAAIIHRRSADILVQEGAIFDQETIELLERESLVD LLMAPCDMYDVLKDILSSYETAVQRLEVNYKTEAEHIKEGDADLDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSK IVPEADMPFLANGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPESRIWDMMIEQGLPEDGKSYL FDGKTGERFDSKVVVGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT VKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_219820.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| rpoB | NP_219820.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| rpoB | NP_219820.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| rpoB | NP_219820.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| rpoB | NP_219820.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| rpoB | NP_219820.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| rpoB | NP_219820.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 44 |
