|
Name : rpoB (CPn0081) Accession : NP_224289.1 Strain : Chlamydophila pneumoniae CWL029 Genome accession: NC_000922 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 94261 - 98019 bp Length : 3759 bp Strand : + Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : ATGTTGAAGTGCCCTGAACGGGTCAGTGTTAAAAAAAAGGAAGATATCCCAGACCTTCCAAATCTTATCGAAATCCAAAT TAAGTCTTATAAGCAGTTTCTTCAAATTGGAAAATTAGCAGAAGAAAGAGAAAATATCGGTTTAGAAGAGGTTTTCAGGG AAATTTTTCCCATTAAATCCTATAACGAAGCTACCGTTCTTGAGTACCTTTCATATAATTTGGGTGTGCCAAAATATTCT CCAGAAGAATGTATCCGTAGAGGAATTACCTATAGCGTCACTTTGAAAGTCCGTTTTCGTTTAACCGATGAAACGGGAAT CAAAGAAGAAGAAGTCTATATGGGAACGATCCCTCTAATGACTGATAAAGGGACATTTATCATTAATGGAGCTGAAAGAG TCGTTGTTTCCCAAGTTCATCGTTCTCCAGGAATTAACTTTGAACAAGAAAAACATTCCAAAGGTAATATTTTATTCTCC TTCAGAATCATTCCTTATCGTGGAAGTTGGCTCGAAGCTATTTTCGATATTAATGACTTAATTTATATCCATATTGATAG AAAAAAACGTAGAAGAAAAATTCTAGCAATCACCTTTATCCGAGCTCTTGGATACTCTTCAGATGCAGATATCATCGAAG AATTCTTCACAATAGGAGAAAGTTCTCTTAGAAGTGAGAAAGACTTTGCTCTTCTTGTTGGAAGGATTTTAGCAGACAAT ATTATTGATGAAGCCTCCTCTCTAGTTTATGGAAAAGCCGGAGAAAAGTTAAGTACAGCAATGTTAAAACGGATGCTCGA TGCTGGAATCGCTTCTGTTAAGATTGCTGTAGATGCTGATGAAAATCATCCTATTATCAAAATGCTCGCTAAGGATCCTA CAGATTCATACGAAGCCGCTTTAAAAGATTTTTATCGTAGACTACGTCCAGGAGAACCTGCAACTCTAGCTAATGCACGT TCTACTATCATGAGGCTCTTCTTTGACCCCAAACGTTATAATCTAGGACGTGTAGGGCGTTATAAGCTCAATCGCAAACT AGGCTTCTCTATAGATGATGAAGCTCTGTCTCAAGTTACTTTGAGAAAAGAAGATGTGATCGGAGCCTTAAAGTATCTGA TTCGTTTGAAAATGGGAGATGAAAAAGCTTGTGTAGACGATATTGATCATCTTGCTAATCGACGTGTCCGCTCTGTCGGA GAACTCATTCAAAATCAATGTCGTTCAGGACTTGCTAGAATGGAGAAAATTGTTAGAGAGAGAATGAATTTATTCGATTT CTCCTCAGATACGTTGACTCCAGGAAAAGTTGTCTCTGCTAAAGGTCTCGCTAGCGTGTTAAAAGATTTCTTTGGCCGCT CCCAGCTTTCGCAGTTTATGGACCAAACCAACCCTGTAGCTGAGTTAACTCACAAACGACGTCTTTCTGCATTAGGTCCA GGAGGACTAAATAGAGAACGCGCAGGATTTGAAGTTCGTGACGTGCACGCAAGTCATTATGGACGTATTTGTCCTATTGA AACTCCTGAAGGTCCAAATATTGGTCTGATCACCTCTCTTTCCTCTTTTGCTAAAATTAACGAATTTGGATTCATTGAAA CTCCTTATAGAATTGTAAGAGATGGAATCGTAACAGATGAAATCGAATACATGACAGCCGATGTTGAAGAAGAATGTGTG ATTGCACAGGCTTCAGCAAGCCTAGATGAGTACAATATGTTTACGGAACCCGTCTGTTGGGTACGTTATGCTGGAGAAGC TTTCGAAGCAGATACAAGCACCGTAACCCATATGGATGTTTCTCCGAAACAGCTCGTTTCTATTGTTACAGGATTGATTC CTTTCTTAGAGCACGACGATGCGAACCGCGCCTTGATGGGCTCCAATATGCAACGTCAAGCGGTTCCCTTACTTAAAACC GAAGCTCCTGTTGTTGGCACTGGATTAGAATGTCGTGCTGCTAAAGATTCTGGAGCTATTGTTGTTGCAGAAGAAGATGG TGTTGTTGATTTTGTTGATGGTTACAAAGTAGTTGTTGCTGCAAAACATAATCCTACAATTAAACGTACCTATCATCTGA AAAAGTTCCTTAGATCTAATTCAGGAACTTGCATTAACCAACAGCCCTTGTGTGCAGTCGGTGATGTCATAACTAAGGGT GATGTGATTGCTGATGGACCCGCAACTGATCGTGGAGAACTTGCTTTAGGTAAAAATGTACTCGTTGCCTTTATGCCTTG GTATGGATACAACTTTGAGGATGCGATCATTATCTCTGAAAAATTGATCAGAGAAGATGCCTATACCTCTATTTATATTG AGGAATTCGAACTAACAGCCCGAGATACAAAATTAGGAAAAGAAGAGATCACTCGTGACATTCCTAACGTATCTGATGAA GTATTGGCCAATCTCGGTGAGGATGGGATCATTCGTATCGGTGCTGAGGTTAAACCTGGGGATATTCTTGTTGGTAAGAT CACACCAAAATCAGAAACAGAATTAGCTCCAGAAGAGCGTCTGCTCCGTGCTATTTTTGGTGAAAAAGCTGCTGACGTTA AAGATGCATCTTTAACAGTGCCTCCAGGAACTGAAGGCGTCGTTATGGATGTTAAAGTCTTCAGTAGAAAGGATAGATTG TCAAAGAGTGATGACGAACTTGTAGAAGAAGCTGTTCATCTTAAAGATTTGCAAAAAGGATATAAAAACCAAGTTGCAAC TTTAAAAACAGAATATCGTGAGAAATTAGGAGCTCTCTTATTAAATGAGAAAGCACCTGCAGCCATTATTCACCGTCGTA CAGCAGAAATCGTTGTTCATGAAGGCCTACTCTTTGATCAAGAGACAATAGAACGGATAGAACAAGAAGATTTAGTGGAT CTTTTAATGCCTAACTGTGAAATGTATGAAGTGTTGAAAGGACTTCTATCAGATTACGAAACGGCATTACAACGGCTAGA AATCAATTATAAGACTGAAGTTGAGCATATTCGTGAGGGAGATGCAGATTTAGATCATGGTGTCATTCGCCAAGTTAAAG TCTACGTTGCCTCTAAGAGAAAACTTCAAGTTGGAGATAAAATGGCTGGACGACACGGAAATAAAGGTGTTGTTTCCAAA ATCGTTCCCGAAGCGGATATGCCATATCTCTCTAACGGAGAAACTGTACAAATGATCCTGAACCCCCTCGGGGTGCCTTC AAGGATGAACCTTGGACAGGTATTAGAAACACACCTAGGTTATGCAGCAAAAACTGCAGGCATTTACGTGAAAACCCCTG TTTTTGAAGGATTCCCTGAACAACGTATCTGGGATATGATGATAGAACAGGGATTACCAGAAGATGGGAAGTCCTTCTTA TATGATGGGAAGACAGGTGAACGCTTTGATAACAAGGTAGTGATAGGCTATATCTATATGCTAAAGCTCAGTCACTTGAT CGCTGATAAGATTCACGCAAGATCTATAGGGCCATATTCTTTAGTCACGCAACAACCTCTCGGTGGTAAAGCTCAGATGG GAGGACAAAGATTCGGGGAAATGGAAGTTTGGGCTCTAGAAGCATATGGGGTTGCTCATATGCTCCAAGAAATTCTAACC GTGAAATCTGATGATGTCTCAGGAAGAACAAGGATTTACGAATCTATCGTTAAGGGGGAAAACCTCTTGCGATCAGGAAC GCCTGAGTCGTTCAATGTGCTAATTAAAGAGATGCAGGGTCTAGGACTTGATGTTCGTCCTATGGTCGTAGACGCTTAA Protein sequence : MLKCPERVSVKKKEDIPDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEATVLEYLSYNLGVPKYS PEECIRRGITYSVTLKVRFRLTDETGIKEEEVYMGTIPLMTDKGTFIINGAERVVVSQVHRSPGINFEQEKHSKGNILFS FRIIPYRGSWLEAIFDINDLIYIHIDRKKRRRKILAITFIRALGYSSDADIIEEFFTIGESSLRSEKDFALLVGRILADN IIDEASSLVYGKAGEKLSTAMLKRMLDAGIASVKIAVDADENHPIIKMLAKDPTDSYEAALKDFYRRLRPGEPATLANAR STIMRLFFDPKRYNLGRVGRYKLNRKLGFSIDDEALSQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDHLANRRVRSVG ELIQNQCRSGLARMEKIVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELTHKRRLSALGP GGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRIVRDGIVTDEIEYMTADVEEECV IAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTVTHMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNMQRQAVPLLKT EAPVVGTGLECRAAKDSGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIKRTYHLKKFLRSNSGTCINQQPLCAVGDVITKG DVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIREDAYTSIYIEEFELTARDTKLGKEEITRDIPNVSDE VLANLGEDGIIRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMDVKVFSRKDRL SKSDDELVEEAVHLKDLQKGYKNQVATLKTEYREKLGALLLNEKAPAAIIHRRTAEIVVHEGLLFDQETIERIEQEDLVD LLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREGDADLDHGVIRQVKVYVASKRKLQVGDKMAGRHGNKGVVSK IVPEADMPYLSNGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQGLPEDGKSFL YDGKTGERFDNKVVIGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYGVAHMLQEILT VKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_224289.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| rpoB | NP_224289.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| rpoB | NP_224289.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| rpoB | NP_224289.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| rpoB | NP_224289.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| rpoB | NP_224289.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| rpoB | NP_224289.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| rpoB | NP_224289.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 43 |
