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Name : rpoB (CP0694) Accession : NP_445236.1 Strain : Chlamydophila pneumoniae AR39 Genome accession: NC_002179 Putative virulence/resistance : Unknown Product : DNA-directed RNA polymerase subunit beta Function : - COG functional category : K : Transcription COG ID : COG0085 EC number : 2.7.7.6 Position : 743183 - 746971 bp Length : 3789 bp Strand : - Note : DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates; beta subunit is part of the catalytic core which binds with a sigma factor to produce the holoenzyme DNA sequence : TTGTCGCATCAAAATAGCAGGAGAACTCGCATGTTGAAGTGCCCTGAACGGGTCAGTGTTAAAAAAAAGGAAGATATCCC AGACCTTCCAAATCTTATCGAAATCCAAATTAAGTCTTATAAGCAGTTTCTTCAAATTGGAAAATTAGCAGAAGAAAGAG AAAATATCGGTTTAGAAGAGGTTTTCAGGGAAATTTTTCCCATTAAATCCTATAACGAAGCTACCGTTCTTGAGTACCTT TCATATAATTTGGGTGTGCCAAAATATTCTCCAGAAGAATGTATCCGTAGAGGAATTACCTATAGCGTCACTTTGAAAGT CCGTTTTCGTTTAACCGATGAAACGGGAATCAAAGAAGAAGAAGTCTATATGGGAACGATCCCTCTAATGACTGATAAAG GGACATTTATCATTAATGGAGCTGAAAGAGTCGTTGTTTCCCAAGTTCATCGTTCTCCAGGAATTAACTTTGAACAAGAA AAACATTCCAAAGGTAATATTTTATTCTCCTTCAGAATCATTCCTTATCGTGGAAGTTGGCTCGAAGCTATTTTCGATAT TAATGACTTAATTTATATCCATATTGATAGAAAAAAACGTAGAAGAAAAATTCTAGCAATCACCTTTATCCGAGCTCTTG GATACTCTTCAGATGCAGATATCATCGAAGAATTCTTCACAATAGGAGAAAGTTCTCTTAGAAGTGAGAAAGACTTTGCT CTTCTTGTTGGAAGGATTTTAGCAGACAATATTATTGATGAAGCCTCCTCTCTAGTTTATGGAAAAGCCGGAGAAAAGTT AAGTACAGCAATGTTAAAACGGATGCTCGATGCTGGAATCGCTTCTGTTAAGATTGCTGTAGATGCTGATGAAAATCATC CTATTATCAAAATGCTCGCTAAGGATCCTACAGATTCATACGAAGCCGCTTTAAAAGATTTTTATCGTAGACTACGTCCA GGAGAACCTGCAACTCTAGCTAATGCACGTTCTACTATCATGAGGCTCTTCTTTGACCCCAAACGTTATAATCTAGGACG TGTAGGGCGTTATAAGCTCAATCGCAAACTAGGCTTCTCTATAGATGATGAAGCTCTGTCTCAAGTTACTTTGAGAAAAG AAGATGTGATCGGAGCCTTAAAGTATCTGATTCGTTTGAAAATGGGAGATGAAAAAGCTTGTGTAGACGATATTGATCAT CTTGCTAATCGACGTGTCCGCTCTGTCGGAGAACTCATTCAAAATCAATGTCGTTCAGGACTTGCTAGAATGGAGAAAAT TGTTAGAGAGAGAATGAATTTATTCGATTTCTCCTCAGATACGTTGACTCCAGGAAAAGTTGTCTCTGCTAAAGGTCTCG CTAGCGTGTTAAAAGATTTCTTTGGCCGCTCCCAGCTTTCGCAGTTTATGGACCAAACCAACCCTGTAGCTGAGTTAACT CACAAACGACGTCTTTCTGCATTAGGTCCAGGAGGACTAAATAGAGAACGCGCAGGATTTGAAGTTCGTGACGTGCACGC AAGTCATTATGGACGTATTTGTCCTATTGAAACTCCTGAAGGTCCAAATATTGGTCTGATCACCTCTCTTTCCTCTTTTG CTAAAATTAACGAATTTGGATTCATTGAAACTCCTTATAGAATTGTAAGAGATGGAATCGTAACAGATGAAATCGAATAC ATGACAGCCGATGTTGAAGAAGAATGTGTGATTGCACAGGCTTCAGCAAGCCTAGATGAGTACAATATGTTTACGGAACC CGTCTGTTGGGTACGTTATGCTGGAGAAGCTTTCGAAGCAGATACAAGCACCGTAACCCATATGGATGTTTCTCCGAAAC AGCTCGTTTCTATTGTTACAGGATTGATTCCTTTCTTAGAGCACGACGATGCGAACCGCGCCTTGATGGGCTCCAATATG CAACGTCAAGCGGTTCCCTTACTTAAAACCGAAGCTCCTGTTGTTGGCACTGGATTAGAATGTCGTGCTGCTAAAGATTC TGGAGCTATTGTTGTTGCAGAAGAAGATGGTGTTGTTGATTTTGTTGATGGTTACAAAGTAGTTGTTGCTGCAAAACATA ATCCTACAATTAAACGTACCTATCATCTGAAAAAGTTCCTTAGATCTAATTCAGGAACTTGCATTAACCAACAGCCCTTG TGTGCAGTCGGTGATGTCATAACTAAGGGTGATGTGATTGCTGATGGACCCGCAACTGATCGTGGAGAACTTGCTTTAGG TAAAAATGTACTCGTTGCCTTTATGCCTTGGTATGGATACAACTTTGAGGATGCGATCATTATCTCTGAAAAATTGATCA GAGAAGATGCCTATACCTCTATTTATATTGAGGAATTCGAACTAACAGCCCGAGATACAAAATTAGGAAAAGAAGAGATC ACTCGTGACATTCCTAACGTATCTGATGAAGTATTGGCCAATCTCGGTGAGGATGGGATCATTCGTATCGGTGCTGAGGT TAAACCTGGGGATATTCTTGTTGGTAAGATCACACCAAAATCAGAAACAGAATTAGCTCCAGAAGAGCGTCTGCTCCGTG CTATTTTTGGTGAAAAAGCTGCTGACGTTAAAGATGCATCTTTAACAGTGCCTCCAGGAACTGAAGGCGTCGTTATGGAT GTTAAAGTCTTCAGTAGAAAGGATAGATTGTCAAAGAGTGATGACGAACTTGTAGAAGAAGCTGTTCATCTTAAAGATTT GCAAAAAGGATATAAAAACCAAGTTGCAACTTTAAAAACAGAATATCGTGAGAAATTAGGAGCTCTCTTATTAAATGAGA AAGCACCTGCAGCCATTATTCACCGTCGTACAGCAGAAATCGTTGTTCATGAAGGCCTACTCTTTGATCAAGAGACAATA GAACGGATAGAACAAGAAGATTTAGTGGATCTTTTAATGCCTAACTGTGAAATGTATGAAGTGTTGAAAGGACTTCTATC AGATTACGAAACGGCATTACAACGGCTAGAAATCAATTATAAGACTGAAGTTGAGCATATTCGTGAGGGAGATGCAGATT TAGATCATGGTGTCATTCGCCAAGTTAAAGTCTACGTTGCCTCTAAGAGAAAACTTCAAGTTGGAGATAAAATGGCTGGA CGACACGGAAATAAAGGTGTTGTTTCCAAAATCGTTCCCGAAGCGGATATGCCATATCTCTCTAACGGAGAAACTGTACA AATGATCCTGAACCCCCTCGGGGTGCCTTCAAGGATGAACCTTGGACAGGTATTAGAAACACACCTAGGTTATGCAGCAA AAACTGCAGGCATTTACGTGAAAACCCCTGTTTTTGAAGGATTCCCTGAACAACGTATCTGGGATATGATGATAGAACAG GGATTACCAGAAGATGGGAAGTCCTTCTTATATGATGGGAAGACAGGTGAACGCTTTGATAACAAGGTAGTGATAGGCTA TATCTATATGCTAAAGCTCAGTCACTTGATCGCTGATAAGATTCACGCAAGATCTATAGGGCCATATTCTTTAGTCACGC AACAACCTCTCGGTGGTAAAGCTCAGATGGGAGGACAAAGATTCGGGGAAATGGAAGTTTGGGCTCTAGAAGCATATGGG GTTGCTCATATGCTCCAAGAAATTCTAACCGTGAAATCTGATGATGTCTCAGGAAGAACAAGGATTTACGAATCTATCGT TAAGGGGGAAAACCTCTTGCGATCAGGAACGCCTGAGTCGTTCAATGTGCTAATTAAAGAGATGCAGGGTCTAGGACTTG ATGTTCGTCCTATGGTCGTAGACGCTTAA Protein sequence : MSHQNSRRTRMLKCPERVSVKKKEDIPDLPNLIEIQIKSYKQFLQIGKLAEERENIGLEEVFREIFPIKSYNEATVLEYL SYNLGVPKYSPEECIRRGITYSVTLKVRFRLTDETGIKEEEVYMGTIPLMTDKGTFIINGAERVVVSQVHRSPGINFEQE KHSKGNILFSFRIIPYRGSWLEAIFDINDLIYIHIDRKKRRRKILAITFIRALGYSSDADIIEEFFTIGESSLRSEKDFA LLVGRILADNIIDEASSLVYGKAGEKLSTAMLKRMLDAGIASVKIAVDADENHPIIKMLAKDPTDSYEAALKDFYRRLRP GEPATLANARSTIMRLFFDPKRYNLGRVGRYKLNRKLGFSIDDEALSQVTLRKEDVIGALKYLIRLKMGDEKACVDDIDH LANRRVRSVGELIQNQCRSGLARMEKIVRERMNLFDFSSDTLTPGKVVSAKGLASVLKDFFGRSQLSQFMDQTNPVAELT HKRRLSALGPGGLNRERAGFEVRDVHASHYGRICPIETPEGPNIGLITSLSSFAKINEFGFIETPYRIVRDGIVTDEIEY MTADVEEECVIAQASASLDEYNMFTEPVCWVRYAGEAFEADTSTVTHMDVSPKQLVSIVTGLIPFLEHDDANRALMGSNM QRQAVPLLKTEAPVVGTGLECRAAKDSGAIVVAEEDGVVDFVDGYKVVVAAKHNPTIKRTYHLKKFLRSNSGTCINQQPL CAVGDVITKGDVIADGPATDRGELALGKNVLVAFMPWYGYNFEDAIIISEKLIREDAYTSIYIEEFELTARDTKLGKEEI TRDIPNVSDEVLANLGEDGIIRIGAEVKPGDILVGKITPKSETELAPEERLLRAIFGEKAADVKDASLTVPPGTEGVVMD VKVFSRKDRLSKSDDELVEEAVHLKDLQKGYKNQVATLKTEYREKLGALLLNEKAPAAIIHRRTAEIVVHEGLLFDQETI ERIEQEDLVDLLMPNCEMYEVLKGLLSDYETALQRLEINYKTEVEHIREGDADLDHGVIRQVKVYVASKRKLQVGDKMAG RHGNKGVVSKIVPEADMPYLSNGETVQMILNPLGVPSRMNLGQVLETHLGYAAKTAGIYVKTPVFEGFPEQRIWDMMIEQ GLPEDGKSFLYDGKTGERFDNKVVIGYIYMLKLSHLIADKIHARSIGPYSLVTQQPLGGKAQMGGQRFGEMEVWALEAYG VAHMLQEILTVKSDDVSGRTRIYESIVKGENLLRSGTPESFNVLIKEMQGLGLDVRPMVVDA |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| BJAB07104_00346 | YP_008207811.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR25 | Protein | 0.0 | 47 |
| BJAB0868_00350 | YP_008211676.1 | DNA-directed RNA polymerase, beta subunit/140 kD subunit | Not tested | AbaR26 | Protein | 0.0 | 47 |
| Gene | GenBank Accn | Product | ID of source DB | Alignment Type | E-val | Identity |
| rpoB | NP_445236.1 | DNA-directed RNA polymerase subunit beta | NC_009085.4918494.p0 | Protein | 0.0 | 47 |
| rpoB | NP_445236.1 | DNA-directed RNA polymerase subunit beta | NC_010410.6003841.p0 | Protein | 0.0 | 47 |
| rpoB | NP_445236.1 | DNA-directed RNA polymerase subunit beta | NC_011586.7046027.p0 | Protein | 0.0 | 47 |
| rpoB | NP_445236.1 | DNA-directed RNA polymerase subunit beta | NC_010400.5987325.p0 | Protein | 0.0 | 47 |
| rpoB | NP_445236.1 | DNA-directed RNA polymerase subunit beta | NC_010611.6233925.p0 | Protein | 0.0 | 47 |
| rpoB | NP_445236.1 | DNA-directed RNA polymerase subunit beta | NC_011595.7060572.p0 | Protein | 0.0 | 47 |
| rpoB | NP_445236.1 | DNA-directed RNA polymerase subunit beta | NC_011035.1.6448762. | Protein | 0.0 | 45 |
| rpoB | NP_445236.1 | DNA-directed RNA polymerase subunit beta | CP002695.1.gene18.p0 | Protein | 0.0 | 43 |
