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Name : secD (XF0225) Accession : NP_297518.1 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 233036 - 234880 bp Length : 1845 bp Strand : + Note : part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side of DNA sequence : ATGCTTGAATTACCCCGTTGGAAATATGTTCTTATTTTTGTTGTGTTTGTGTTGAGCACGCTGTACGCGTTACCAAACGT GTATCAAAAAGATCCTTCGGTGCAGATTACCGCCAATCGAGGCGGCCATATCGACGATGCATTCCGCCAGCAGGTGATGA CTGATCTGCAAGCATCCGGCATTGTGCCTAAGGCCGTGACCAAGGAGGGGGAGAGCCTGATGGTGCGCTTGATGTCGTTG GAGATGCAGACCCGTGCCAGCGATGTGTTGCGGGCTAAGGTCGGTGAGAATTACACCGTTGCATTGAATCTCGCTTCCAC TGTGCCAGATTGGTTGGCTAAGTTGGGTGGGCGACCGATGGTGTTAGGTTTGGATCTGGTTGGCGGTGTGCATTTCGCGC TTCAGGTGGATCAGAAGGCCGCTCTGAATAAATGTATGGATGCTTTTGTTGAGGAGGTACGTTCGACGTTGGGTAGCAAG CGTATTGGCTTCCGCATGGTCGAACGCCGTCCGGACAACACGATTCGAGTGACGTTTGATGATGATGCTCATCTCAATGA AGCACGTATGGTGTTGTTTAAGGAGCAAGTGGGGCTGAATTATTCGGTATCCGGAAATACCTTGATTGCTCGTGTTTCTG AGAATGAGTTGCGTCAGATTGCCAGTGGTGCAGTTGAGCAAAATCTGACGACTCTGCGTAATCGCATCAATGAATTAGGC GTGGCCGAACCAATTATCCAACGCCAGGGGGATGATCGTATTGTGGTTGAGTTGCCTGGTGTTCAGGACACTGCTGAGGC TAAACGTCTGATCGGTGCGACTGCCACGCTGGAGTTTCGCGGTGTGGTTGACGGGGATGCCTATGAGGCAGTCCGTACTG GGAATGTTCCTCCTGAGGCCAAGGTGTATTACATACGCGGCACCAACCAGCCAGTTTTATTGAATAAGCGTGTGATTGTT TCTGGTGATGAGATGGTGAATGCGACGGTCGGTGTGGATGAGAACGGCATGCCAGCGGTCAATGTCACCCTCAGTAATGT TGCTGGCCAGCGCATGTTGGACTACACGCAGCGCAATCTTTACAAGCTGATGTCTGTGGTCTACATCGAGCGTATTCCGA CGGTGAGCATGGTTGATGGTAAAGAAGTGCGTGGCGTGCGGTTAAAGGAAGAGGCATTGTCCCCAACCCGGATTGCTGGG GTATTTGGCAAAAACTTCCGTACCACCGGGTTGGAGAAGACTGAGGCTGAAAATCTGTCTAAATTGTTGCGCGCTGGTTC GTTGGCTGCACCGATGGATTTCGTTGAGGAATATGTGATCGGTCCTAGTCTGGGTGCAGAGAATGTAGAGCGTGGTGTGA CTGCAGTGGTGTTTTCTTTCCTATTCACCCTGGTGTTTTTCACCATCTATTACCGCATGTTTGGTGTGATTACTTCATTG GCATTGCTGTTTAATTTGTTGATTGTGGTAGCGGTGATGTCGCTGTTTGGTGCAACCATGACTTTGCCGGGTTTTGCCGG GTTGGCGCTGTCGGTCGGGCTTTCGGTGGATGCTAACGTGTTGATCAACGAGCGTATCCGTGAGGAGTTGCGTCACGGGA TGCCTCCGAGGTCGGCGATTGTGGCCGGTTACGACAAGGCGGGTAGCACGATTCTTGATGCCAATTTGACCGGACTGATT GTTGGTGTTGCCTTGTATGCTTTCGGAACCGGTCCTTTGAAGGGCTTTGCGTTGACTATGATCATCGGGATTTTCGCCTC AATGTTCACTGCGATTACGGTATCGCGTTCGCTCTCTGCGCTGATTTACGGTACGCGCAAGAATCTCAAGTCTTTGGCTA TCTGA Protein sequence : MLELPRWKYVLIFVVFVLSTLYALPNVYQKDPSVQITANRGGHIDDAFRQQVMTDLQASGIVPKAVTKEGESLMVRLMSL EMQTRASDVLRAKVGENYTVALNLASTVPDWLAKLGGRPMVLGLDLVGGVHFALQVDQKAALNKCMDAFVEEVRSTLGSK RIGFRMVERRPDNTIRVTFDDDAHLNEARMVLFKEQVGLNYSVSGNTLIARVSENELRQIASGAVEQNLTTLRNRINELG VAEPIIQRQGDDRIVVELPGVQDTAEAKRLIGATATLEFRGVVDGDAYEAVRTGNVPPEAKVYYIRGTNQPVLLNKRVIV SGDEMVNATVGVDENGMPAVNVTLSNVAGQRMLDYTQRNLYKLMSVVYIERIPTVSMVDGKEVRGVRLKEEALSPTRIAG VFGKNFRTTGLEKTEAENLSKLLRAGSLAAPMDFVEEYVIGPSLGAENVERGVTAVVFSFLFTLVFFTIYYRMFGVITSL ALLFNLLIVVAVMSLFGATMTLPGFAGLALSVGLSVDANVLINERIREELRHGMPPRSAIVAGYDKAGSTILDANLTGLI VGVALYAFGTGPLKGFALTMIIGIFASMFTAITVSRSLSALIYGTRKNLKSLAI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 8e-101 | 44 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 6e-101 | 44 |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 5e-101 | 44 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 5e-101 | 44 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 5e-101 | 44 |
