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Name : XF2460 (XF2460) Accession : NP_299739.1 Strain : Xylella fastidiosa 9a5c Genome accession: NC_002488 Putative virulence/resistance : Unknown Product : c-type cytochrome biogenesis membrane protein Function : - COG functional category : O : Posttranslational modification, protein turnover, chaperones COG ID : COG1138 EC number : - Position : 2344949 - 2346889 bp Length : 1941 bp Strand : + Note : similar to SP|P52225 (percent identity: 52 %/query alignment coverage: 99.5 %/subject alignment coverage: 97.4 %); identified by sequence similarity; ORF located using Glimmer/RBSfinder DNA sequence : ATGCTGCCTGAGTTTGGCCAGATCCTCCTGATCCTCGCCCTGCTGACAGCACTGCTGCAGGGACTGCTTCCCCTGATTGG CGCCCAGCGCCGCCGCACGGCTTGGATGGCCGTTGCACGCCCAGCCGCCTATGTGCAACTGAGCCTGCTCGCTGGCGCAT TCGCACTGCTCACCTATGCCTTCCTCGGCAACGACTTCTCCGTCCAATACGTCGCCGAAAACTCCCATTCACTGCTACCC ACCCTCTACCGCTCTACCGCCGTGTGGGGTGCCCACGAAGGATCCCTCTTACTCTGGGTATTGCTCCTGGCAGGATGGAC CGCTAGCGTCGCCTTACGTTCCCACACCCTCCCAGCCACCCTGAGCGCACGCATCCTTGGCGTCCTGGGCCTGATTGCAC TCGGCTTCCTCGCCCTGATCCTCTTCACCTCCAACCCATTCGCACGTCTCCTGCCTGCCGTCCCAGAAGGGAACGACCTC AACCCGTTGCTGCAAGATCCCGGGATGATTGTGCATCCCCCCCTGTTATATGCCGGCTACATCGGTTTCGCAGTGCCATT CGCCTTTGCCGTCGCGGTCCTGCTGGAAGGACGCATCGATCCAACCTGGCTACGCTGGAGCCGCCCTTGGACCCATACCG CCTGGGCACTGCTGACCCTGGGTATCGCACTGGGCAGCTGGTGGGCCTACTACGAACTCGGCTGGGGCGGCTGGTGGTTC TGGGACCCCGTGGAAAACGCCAGCTTCATGCCGTGGCTCATCGGTGTCGCACTGATTCATTCCCAAGCGATCACCGACAA ACGCGGCAGCTTCACCCACTGGACACTCCTGCTCGCAATCACCGCCTTTGCACTAGCACTGCTGGGCACATTCCTCGTCC GCTCAAGCGTACTGACCTCAGTCCATGCCTTTGCTGCTGATCCGGTACGCGGCGCGTTTATTCTGCTGCTCATCTTCACG TTGATTGGCGGCGCACTGCTGCTGTATGCACGGCGTGCACCGCAGCTCACCCCCGTCACAATAAACATGCAACAACGCTT TACACCCGTCTCACGCGAAACCCTATTACTGCTCAACAACCTATTGCTGACCTGCGCCTGTGCGATGGTGCTGCTAGGCA CCCTCTATCCCCTGCTGGCCGATGCACTGGCACTGGGTCAACTTTCAGTCGGCCCACCCTACTTCGGCCCCCTATTCACC CTGCTGATGACACCACTAATCGTCTTACTGCCATTGGGTCCATTCACCCGATGGCAACGCGAACACCCCTCAACACCCCT CGTACTGCTGGCCCCTTGGGCCGCACTGAGCCTGGCTGTCGCCGCACTGGCTGGCATCACCACACCACAGCACCATTGGA AAACCATGCTCAGCGTGGCCGCGGCAGCATGGGTACTCCTGGGAACCCTCCGCTTCCTCTGGTGGCACTGGCGCATCACC GGATCCCGTCCCACCCCCAGCACCCTGGGCATGGTCCTGGCACACGCCGGAATTGGTGTCTTCCTCACTGGCGCGCTGTT AGTTGAAACACTCAGCCTACAACGTGAAATTGCACTCAGCCCGGGCCAGACACTCACCCTCGGCCCCATCACCCTGCACT TTGATGCCCTCCTCGAACACCACGGCCCCAACTACGTGGCTGATCGTGCCCGATTCAGCCTATTACGCAACACGCATCCC CTGGGCACCCTGACGACAGAAAAACGCCGCTATGTCAGTGGCGGCCAAGTCACCACCGAAGCCGGCATCCATCCTGGAGC GCTCGGTGACATCTACGTCGCATTAGGAGAATCCCTGGGCAATGGGTCATGGGCAATTCAGGCACACTACAAACCCTTCG TCCGCTGGATCTGGCTGGGCGCAGCACTAATGGCCCTGGGCGGGCTGATCGCTGCTGCTGATCGCCGGTTCCGCCACCAC CCGGAGTCATCGCATGTCTGA Protein sequence : MLPEFGQILLILALLTALLQGLLPLIGAQRRRTAWMAVARPAAYVQLSLLAGAFALLTYAFLGNDFSVQYVAENSHSLLP TLYRSTAVWGAHEGSLLLWVLLLAGWTASVALRSHTLPATLSARILGVLGLIALGFLALILFTSNPFARLLPAVPEGNDL NPLLQDPGMIVHPPLLYAGYIGFAVPFAFAVAVLLEGRIDPTWLRWSRPWTHTAWALLTLGIALGSWWAYYELGWGGWWF WDPVENASFMPWLIGVALIHSQAITDKRGSFTHWTLLLAITAFALALLGTFLVRSSVLTSVHAFAADPVRGAFILLLIFT LIGGALLLYARRAPQLTPVTINMQQRFTPVSRETLLLLNNLLLTCACAMVLLGTLYPLLADALALGQLSVGPPYFGPLFT LLMTPLIVLLPLGPFTRWQREHPSTPLVLLAPWAALSLAVAALAGITTPQHHWKTMLSVAAAAWVLLGTLRFLWWHWRIT GSRPTPSTLGMVLAHAGIGVFLTGALLVETLSLQREIALSPGQTLTLGPITLHFDALLEHHGPNYVADRARFSLLRNTHP LGTLTTEKRRYVSGGQVTTEAGIHPGALGDIYVALGESLGNGSWAIQAHYKPFVRWIWLGAALMALGGLIAAADRRFRHH PESSHV |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| ccmF | AAN62106.1 | putative cytochrome C-type biogenesis protein CcmF | Not tested | PAGI-2(C) | Protein | 2e-96 | 52 |
| ccmF | YP_217241.1 | cytochrome c-type biogenesis protein | Not tested | SPI-12 | Protein | 4e-79 | 51 |
