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Name : secD (VC0743) Accession : NP_230392.1 Strain : Genome accession: NC_002505 Putative virulence/resistance : Unknown Product : preprotein translocase subunit SecD Function : - COG functional category : U : Intracellular trafficking, secretion and vesicular transport COG ID : COG0342 EC number : - Position : 795839 - 797692 bp Length : 1854 bp Strand : + Note : 'part of the preprotein secretory system; when complexed with proteins SecF and YajC, SecDFyajC stimulates the proton motive force-driven protein translocation, and appears to be required for the release of mature proteins from the extracytoplasmic side o DNA sequence : GTGCTAAACCGTTATCCGTTATGGAAGTATCTGATGGTGATGTTAACCATCGCCGTTGCAGCCTTGTATGCACTTCCAAA TATCTACGGTGAAGATCCAGCTATCCAAATAACAGGGGCGCGTGGCGCCTCTGTTGATATGTCAACGCTGGATGCTGTCA CCGATGCGCTCAATAAAGCGCAACTCTCCCAAAAATCCATTGCTCTTGAAAATGGCTCAATCCTTGTTCGTTTCAATGAT ACGGATACGCAAATCAGCGCCCGAGATATCATCAGTGAAGCGTTAGGTAAGGATAAAATCGTCGCGTTAAACCTCGCTCC TTCAACGCCATATTGGCTAGAGTCAATTGGTGCTGCACCAATGAAACTCGGCCTTGATCTGCGTGGTGGTGTGCACTTCC TGATGGAAGTGGATATGGATGCCGCGATGGAAAAATTGGTCAGCCAACAAGAAGAAGCTTTCCGCAGTGATCTGCGTGAC GAGAAAATTCGTTACCGCGCGATCCGTCCATTATCGGATGCGGTTGAAGTGACCCTGCGTGATGCCGAGCAGCTTGCGCA AACTAAGCTGCTTCTGGAGTCGAAACACCGTGATATGACCTTTACGACTTCAGAATCCGATGGCCGTTTTGTGCTCGTGG CTAAGTTTACCGAAGCTCGCTTACAGGAAATTCGCAACTACGCCGTTGAGCAGAACATCACTATTTTGCGTAACCGGGTG AACGAACTGGGTGTGGCTGAGCCTCTGGTTCAACGCCAAGGTGCGACACGTATCGTGGTAGAGCTGCCGGGTGTACAAGA TACAGCGCGTGCTAAAGAAATCTTAGGCGCGACCGCAACCCTTGAATTTCGTGAAGTGGACGATAAAGCCGACCTTGCCG CTGCGGCAGCAGGACGTGCGCCTGCTGGCAGCGAAATCAAGTTCGATCGTAATGGTCGTCCTGTGGTGCTGAAAAAGCGC GTGATTCTGGGTGGTTCAAGCATTACCGATGCAAGCTCAAGCGCCGACGAATATGGTCGCCCACAGGTGAACATTTCGCT CGATAGCGAAGGCGGCAACAAGATGTCAGCGTTCTCGAAAAAGAACATTGGCAAGCTGATGGCGACGGTGTTTGCCGAAT ACAAAGACAGCGGTAAGCGCTCTCCTGAAGGTAAAGTCATTCTGACCAAGCATGAAGAAGTGATTAACCAAGCGACGATT CAGTCGGCATTGGGACGTAACTTCCGTATTACTGGGATTGATTCACCGGCAGAAGCGCATAACCTTGCTCTGCTATTGCG TGCCGGTGCTTTGATTGCGCCAATTTCTATCGTCGAAGAGCGCACCATTGGTCCATCAATGGGTCAGCAGAATATCGATA TGGGTATTCAGGCCTGTATTTGGGGTATGGTGGCGGTAATGCTGTTTACGGTTCTTTACTACCGTAAGTTTGGCATGATT GCTAACATCGCACTAATGGCGAACCTCGTGTTGATCATTGGCGTAATGTCGATGATCCCGGGCGCAACCATGACCTTGCC GGGTATTGCTGGTATCGTGTTGACGGTCGGTATGGCGGTCGATGCCAACGTACTGATTTTCGAGCGTATTCGTGAAGAGC TACGCGAAGGAAAAAATCCGCAGCAAGCGATTCATCAAGGTTACGCTAACGCATTCAGTACCATTGCCGATGCCAACATC ACCACCTTAATTACGGCGATCATTTTGTTTGCCGTTGGTACAGGGGCGATTAAAGGCTTCGCAGTGACGCTGTCTATCGG TATTTTAACCTCTATGTTTACCGCGATTGTGGGTACACGTTGTATCGTGAACCTGCTGTATGGCGGCAAACGTATCAACA AACTGTCGATCTGA Protein sequence : MLNRYPLWKYLMVMLTIAVAALYALPNIYGEDPAIQITGARGASVDMSTLDAVTDALNKAQLSQKSIALENGSILVRFND TDTQISARDIISEALGKDKIVALNLAPSTPYWLESIGAAPMKLGLDLRGGVHFLMEVDMDAAMEKLVSQQEEAFRSDLRD EKIRYRAIRPLSDAVEVTLRDAEQLAQTKLLLESKHRDMTFTTSESDGRFVLVAKFTEARLQEIRNYAVEQNITILRNRV NELGVAEPLVQRQGATRIVVELPGVQDTARAKEILGATATLEFREVDDKADLAAAAAGRAPAGSEIKFDRNGRPVVLKKR VILGGSSITDASSSADEYGRPQVNISLDSEGGNKMSAFSKKNIGKLMATVFAEYKDSGKRSPEGKVILTKHEEVINQATI QSALGRNFRITGIDSPAEAHNLALLLRAGALIAPISIVEERTIGPSMGQQNIDMGIQACIWGMVAVMLFTVLYYRKFGMI ANIALMANLVLIIGVMSMIPGATMTLPGIAGIVLTVGMAVDANVLIFERIREELREGKNPQQAIHQGYANAFSTIADANI TTLITAIILFAVGTGAIKGFAVTLSIGILTSMFTAIVGTRCIVNLLYGGKRINKLSI |
| Gene | GenBank Accn | Product | Virulance or Resistance | PAI or REI | Alignment Type | E-val | Identity |
| secD | AAT96039.1 | SecD | Not tested | T-PAI | Protein | 4e-117 | 50 |
| secD | AAT96067.1 | SecD | Not tested | T-PAI | Protein | 4e-117 | 50 |
| secD | AAT96119.1 | SecD | Not tested | T-PAI | Protein | 4e-117 | 50 |
| secD | AAT96179.1 | SecD | Not tested | T-PAI | Protein | 4e-117 | 50 |
| secD | AAT96103.1 | SecD | Not tested | T-PAI | Protein | 1e-117 | 50 |
