Gene Information

Name : VCA0055 (VCA0055)
Accession : NP_232456.1
Strain :
Genome accession: NC_002506
Putative virulence/resistance : Virulence
Product : hypothetical protein
Function : -
COG functional category : S : Function unknown
COG ID : COG3272
EC number : -
Position : 62337 - 63305 bp
Length : 969 bp
Strand : +
Note : -

DNA sequence : 
GTGTTGGAGACTCGTATGCAGACCACGCCACTCAAAATTGGGATCAGTGCTTGTCTACTTGGAGCAAAAGTACGCTTCGA
TGGCGGGCATAAAATTAGCCACTTCGTGACCAATGAGCTCGATCGTTACGCGGAGTTTGTTTCTGTTTGTCCAGAAATGG
GAATGGGGCTACCTGTTCCGCGTCCCACATTACGACTTATCTCGGAAAATGAACGGATTGCCTTGGTGGAAACCAAAGAT
AGCTCGCGTGATCACACCGCAGCGTTAGAGAGTTACTCACAGCAGAAAGTTGCTGAGTTACAACATGCTGAGTTGTGTGG
ATACATCGTCTGCGCAAAATCACCCAGTTGTGGTATGGAGCGTGTCAAAGTCTACAAGCACAATGGCACCGAAAAAGACG
GCGTTGGCGTCTATACCCGAATTTTGATGGAAAAAATGCCGTGGCTACCGATTGAAGAAGATGGTCGATTGAATGATCCG
GTCTTGCGGGAAAATTACATCACCCGAGTTTTCTGTTTGCATGATTTTTACACCAGCATGGGCGATGCGCCGAGCGCGAA
AAAAATCGTCGAATTTCACTCTCGCTACAAATTAACCCTGATGGCACATAACCCACAGGCGTATCGCGCGTTAGGGCGCT
TAGTGGCGAATGTGAAACAGTATCCACTGGATTCTTTTATCCAAGAGTACCGCTTAGGTTTGATGCAAGCTCTGGCTCAC
CGTGCTAGCCGCAAAAATAACACGAATGTGCTGATGCATTTGCAAGGTTATTTCAAGCGCTCGCTGAACAAATTACAAAA
AGCCGAACTGGCTCAAGTGATCGAGAGCTATCGGGTGGGTGAGCTGCCACTGTTAGCGCCCATCACGCTACTCAAACATT
ATCTCGCTCTGTTTCCTGATGCTTATCTCGCTCAGCAGCGCTACCTAAACCCTTATCCTCAGGAGTTGAAACTACGTTAT
GGTTTGTGA

Protein sequence : 
MLETRMQTTPLKIGISACLLGAKVRFDGGHKISHFVTNELDRYAEFVSVCPEMGMGLPVPRPTLRLISENERIALVETKD
SSRDHTAALESYSQQKVAELQHAELCGYIVCAKSPSCGMERVKVYKHNGTEKDGVGVYTRILMEKMPWLPIEEDGRLNDP
VLRENYITRVFCLHDFYTSMGDAPSAKKIVEFHSRYKLTLMAHNPQAYRALGRLVANVKQYPLDSFIQEYRLGLMQALAH
RASRKNNTNVLMHLQGYFKRSLNKLQKAELAQVIESYRVGELPLLAPITLLKHYLALFPDAYLAQQRYLNPYPQELKLRY
GL

• Homologs from PAI DB

GeneGenBank Accn Product Virulance or Resistance PAI or REI Alignment Type E-val Identity
SC1410 YP_216397.1 inner membrane protein Not tested SPI-2 Protein 2e-78 51
ORF 319 CAB37410.1 - Not tested SPI-2 Protein 3e-78 51
STY1731 NP_456139.1 putative pathogenicity island protein Not tested SPI-2 Protein 4e-78 51
t1257 NP_805060.1 pathogenicity island protein Not tested SPI-2 Protein 4e-78 51
orf319 NP_460354.1 inner membrane protein Not tested SPI-2 Protein 3e-78 51

• Homologs from VFDB (virulence genes)

GeneGenBank Accn Product ID of source DB Alignment Type E-val Identity
VCA0055 NP_232456.1 hypothetical protein VFG0490 Protein 1e-78 51